8C7L | pdb_00008c7l

Serendipitous structure of OmpF contaminant in space group P21.

PDB DOI: https://doi.org/10.2210/pdb8C7L/pdb

Classification: MEMBRANE PROTEIN
Organism(s): Escherichia coli BL21(DE3)
Mutation(s): No
Membrane Protein: Yes OPM PDBTM

Deposited: 2023-01-16 Released: 2023-02-22
Deposition Author(s): Bloch, Y., Theunissen, S., Savvides, S.N.
Funding Organization(s): Research Foundation - Flanders (FWO)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.52 Å
R-Value Free:
0.255 (Depositor), 0.258 (DCC)
R-Value Work:
0.234 (Depositor), 0.238 (DCC)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Serendipitous structure of OmpF contaminant in space group P21.

Bloch, Y., Theunissen, S., Savvides, S.N.

To be published.

Macromolecule Content

Total Structure Weight: 236.19 kDa
Atom Count: 15,894
Modeled Residue Count: 2,040
Deposited Residue Count: 2,172
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Outer membrane porin F	A, B, C, D, E A, B, C, D, E, F	362	Escherichia coli BL21(DE3)	Mutation(s): 0 Membrane Entity: Yes
UniProt
Find proteins for P02931 (Escherichia coli (strain K12)) Explore P02931 Go to UniProtKB: P02931
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02931
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.52 Å
R-Value Free: 0.255 (Depositor), 0.258 (DCC)
R-Value Work: 0.234 (Depositor), 0.238 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.811	α = 90
b = 151.002	β = 117.936
c = 109.658	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
SIMBAD	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-02-22

Deposition Author(s):

Funding Organization	Location	Grant Number
Research Foundation - Flanders (FWO)	Belgium	12S0519N

Revision History (Full details and data files)

Version 1.0: 2023-02-22
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.