8C7G

Drosophila melanogaster Rab7 GEF complex Mon1-Ccz1-Bulli


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Structure of the metazoan Rab7 GEF complex Mon1-Ccz1-Bulli.

Herrmann, E.Schafer, J.H.Wilmes, S.Ungermann, C.Moeller, A.Kummel, D.

(2023) Proc Natl Acad Sci U S A 120: e2301908120-e2301908120

  • DOI: https://doi.org/10.1073/pnas.2301908120
  • Primary Citation of Related Structures:  
    8C7G

  • PubMed Abstract: 

    The endosomal system of eukaryotic cells represents a central sorting and recycling compartment linked to metabolic signaling and the regulation of cell growth. Tightly controlled activation of Rab GTPases is required to establish the different domains of endosomes and lysosomes. In metazoans, Rab7 controls endosomal maturation, autophagy, and lysosomal function. It is activated by the guanine nucleotide exchange factor (GEF) complex Mon1-Ccz1-Bulli (MCBulli) of the tri-longin domain (TLD) family. While the Mon1 and Ccz1 subunits have been shown to constitute the active site of the complex, the role of Bulli remains elusive. We here present the cryo-electron microscopy (cryo-EM) structure of MCBulli at 3.2 Å resolution. Bulli associates as a leg-like extension at the periphery of the Mon1 and Ccz1 heterodimers, consistent with earlier reports that Bulli does not impact the activity of the complex or the interactions with recruiter and substrate GTPases. While MCBulli shows structural homology to the related ciliogenesis and planar cell polarity effector (Fuzzy-Inturned-Wdpcp) complex, the interaction of the TLD core subunits Mon1-Ccz1 and Fuzzy-Inturned with Bulli and Wdpcp, respectively, is remarkably different. The variations in the overall architecture suggest divergent functions of the Bulli and Wdpcp subunits. Based on our structural analysis, Bulli likely serves as a recruitment platform for additional regulators of endolysosomal trafficking to sites of Rab7 activation.


  • Organizational Affiliation

    Department of Chemistry and Pharmacy, Institute of Biochemistry, University of Münster, 48149 Münster, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mic1 domain-containing protein642Drosophila melanogasterMutation(s): 0 
Gene Names: BulliDmel\CG8270CG8270Dmel_CG8270
UniProt
Find proteins for Q9VRX1 (Drosophila melanogaster)
Explore Q9VRX1 
Go to UniProtKB:  Q9VRX1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VRX1
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Caffeine, calcium, zinc sensitivity 1507Drosophila melanogasterMutation(s): 0 
Gene Names: Ccz1C7orf28BDccz1Dmel\CG14980NP_647835CG14980Dmel_CG14980
UniProt
Find proteins for Q9VZL5 (Drosophila melanogaster)
Explore Q9VZL5 
Go to UniProtKB:  Q9VZL5
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UniProt GroupQ9VZL5
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar fusion protein MON1 homolog528Drosophila melanogasterMutation(s): 0 
Gene Names: Mon1Dmel\CG11926Dmon1MON1Mon1-RANP_608868CG11926Dmel_CG11926
UniProt
Find proteins for Q9VR38 (Drosophila melanogaster)
Explore Q9VR38 
Go to UniProtKB:  Q9VR38
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9VR38
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC3.2
MODEL REFINEMENTPHENIX1.19

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-17
    Type: Initial release