8C7E | pdb_00008c7e

Serendipitous cyanase structure from Serratia-like contamination

PDB DOI: https://doi.org/10.2210/pdb8C7E/pdb

Classification: LYASE
Organism(s): unidentified
Mutation(s): No

Deposited: 2023-01-14 Released: 2023-02-22
Deposition Author(s): Bloch, Y., Skladanowska, K., Savvides, S.N.
Funding Organization(s): Research Foundation - Flanders (FWO)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.236 (Depositor), 0.230 (DCC)
R-Value Work:
0.202 (Depositor), 0.200 (DCC)
R-Value Observed:
0.203 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Serendipitous cyanase structure from Serratia-like contamination.

Bloch, Y., Skladanowska, K., Savvides, S.N.

To be published.

Macromolecule Content

Total Structure Weight: 332.81 kDa
Atom Count: 23,339
Modeled Residue Count: 3,100
Deposited Residue Count: 3,100
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cyanate hydratase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T	155	unidentified	Mutation(s): 0 EC: 4.2.1.104
UniProt
Find proteins for A0A3E2EMR4 (Serratia marcescens) Explore A0A3E2EMR4 Go to UniProtKB: A0A3E2EMR4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A3E2EMR4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CL Query on CL Download Ideal Coordinates CCD File SDF format, chain Z [auth E] SDF format, chain Y [auth D] SDF format, chain X [auth C] SDF format, chain W [auth C] SDF format, chain V [auth A] SDF format, chain U [auth A] SDF format, chain NA [auth S] SDF format, chain MA [auth R] SDF format, chain LA [auth P] SDF format, chain KA [auth O] SDF format, chain JA [auth O] SDF format, chain IA [auth N] SDF format, chain HA [auth M] SDF format, chain GA [auth M] SDF format, chain FA [auth L] SDF format, chain EA [auth K] SDF format, chain DA [auth J] SDF format, chain CA [auth I] SDF format, chain BA [auth G] SDF format, chain AA [auth F] MOL2 format, chain Z [auth E] MOL2 format, chain Y [auth D] MOL2 format, chain X [auth C] MOL2 format, chain W [auth C] MOL2 format, chain V [auth A] MOL2 format, chain U [auth A] MOL2 format, chain NA [auth S] MOL2 format, chain MA [auth R] MOL2 format, chain LA [auth P] MOL2 format, chain KA [auth O] MOL2 format, chain JA [auth O] MOL2 format, chain IA [auth N] MOL2 format, chain HA [auth M] MOL2 format, chain GA [auth M] MOL2 format, chain FA [auth L] MOL2 format, chain EA [auth K] MOL2 format, chain DA [auth J] MOL2 format, chain CA [auth I] MOL2 format, chain BA [auth G] MOL2 format, chain AA [auth F] mmCIF format, chain Z [auth E] mmCIF format, chain Y [auth D] mmCIF format, chain X [auth C] mmCIF format, chain W [auth C] mmCIF format, chain V [auth A] mmCIF format, chain U [auth A] mmCIF format, chain NA [auth S] mmCIF format, chain MA [auth R] mmCIF format, chain LA [auth P] mmCIF format, chain KA [auth O] mmCIF format, chain JA [auth O] mmCIF format, chain IA [auth N] mmCIF format, chain HA [auth M] mmCIF format, chain GA [auth M] mmCIF format, chain FA [auth L] mmCIF format, chain EA [auth K] mmCIF format, chain DA [auth J] mmCIF format, chain CA [auth I] mmCIF format, chain BA [auth G] mmCIF format, chain AA [auth F]	AA [auth F] BA [auth G] CA [auth I] DA [auth J] EA [auth K] AA [auth F], BA [auth G], CA [auth I], DA [auth J], EA [auth K], FA [auth L], GA [auth M], HA [auth M], IA [auth N], JA [auth O], KA [auth O], LA [auth P], MA [auth R], NA [auth S], U [auth A], V [auth A], W [auth C], X [auth C], Y [auth D], Z [auth E]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain AA [auth F] Focus chain BA [auth G] Focus chain CA [auth I] Focus chain DA [auth J] Focus chain EA [auth K] Focus chain FA [auth L] Focus chain GA [auth M] Focus chain HA [auth M] Focus chain IA [auth N] Focus chain JA [auth O] Focus chain KA [auth O] Focus chain LA [auth P] Focus chain MA [auth R] Focus chain NA [auth S] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth C] Focus chain X [auth C] Focus chain Y [auth D] Focus chain Z [auth E] Interactions & Density Focus chain AA [auth F] Focus chain BA [auth G] Focus chain CA [auth I] Focus chain DA [auth J] Focus chain EA [auth K] Focus chain FA [auth L] Focus chain GA [auth M] Focus chain HA [auth M] Focus chain IA [auth N] Focus chain JA [auth O] Focus chain KA [auth O] Focus chain LA [auth P] Focus chain MA [auth R] Focus chain NA [auth S] Focus chain U [auth A] Focus chain V [auth A] Focus chain W [auth C] Focus chain X [auth C] Focus chain Y [auth D] Focus chain Z [auth E]