8C7D | pdb_00008c7d

Structure of the GEF Kalirin DH2 Domain

PDB DOI: https://doi.org/10.2210/pdb8C7D/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-14 Released: 2024-01-24
Deposition Author(s): Callens, M.C., Thompson, A.P., Gray, J.L., Bountra, C., von Delft, F., Brennan, P.E.
Funding Organization(s): Other private, Alzheimers Research UK (ARUK)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.86 Å
R-Value Free:
0.275 (Depositor), 0.276 (DCC)
R-Value Work:
0.227 (Depositor), 0.229 (DCC)
R-Value Observed:
0.230 (Depositor)

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Structure-based alignment and analysis of RHO selectivity of RHO-DBL GTPase exchange factors

Callens, M.C., Thompson, A.P., Gray, J.L., von Delft, F., Brennan, P.E.

To be published.

Macromolecule Content

Total Structure Weight: 24.06 kDa
Atom Count: 1,619
Modeled Residue Count: 195
Deposited Residue Count: 201
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Kalirin	A	201	Homo sapiens	Mutation(s): 0 Gene Names: KALRN, DUET, DUO, HAPIP, TRAD EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for O60229 (Homo sapiens) Explore O60229 Go to UniProtKB: O60229
PHAROS: O60229 GTEx: ENSG00000160145
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O60229
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.86 Å
R-Value Free: 0.275 (Depositor), 0.276 (DCC)
R-Value Work: 0.227 (Depositor), 0.229 (DCC)
R-Value Observed: 0.230 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 27.324	α = 90
b = 74.478	β = 90
c = 100.121	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHENIX	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2024-01-24

Deposition Author(s):

Funding Organization	Location	Grant Number
Other private		--
Alzheimers Research UK (ARUK)	United Kingdom	--

Revision History (Full details and data files)

Version 1.0: 2024-01-24
Type: Initial release
Version 1.1: 2024-11-06
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.