8C65

Crystal structure of cutinase AdCut from Acidovorax delafieldii (PBS depolymerase)

PDB DOI: https://doi.org/10.2210/pdb8C65/pdb

Classification: HYDROLASE
Organism(s): Acidovorax delafieldii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-01-11 Released: 2024-01-24
Deposition Author(s): Zahn, M., Clark, M.
Funding Organization(s): UK Research and Innovation (UKRI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.215
R-Value Work: 0.175

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Predictions of the substrate specificities of the plastic-degrading enzymes IsPETase and AdCut

Clark, M., Zahn, M.

To be published.

Macromolecule Content

Total Structure Weight: 58.76 kDa
Atom Count: 4,411
Modelled Residue Count: 526
Deposited Residue Count: 542
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PBS(A) depolymerase	A, B	271	Acidovorax delafieldii	Mutation(s): 0 Gene Names: pbsA
UniProt
Find proteins for Q8RR62 (Acidovorax delafieldii) Explore Q8RR62 Go to UniProtKB: Q8RR62
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8RR62
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.215
R-Value Work: 0.175
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.798	α = 90
b = 96.43	β = 111.033
c = 58.525	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
STARANISO	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-01-24

Deposition Author(s):

Funding Organization	Location	Grant Number
UK Research and Innovation (UKRI)	United Kingdom	Research England E3

Revision History (Full details and data files)

Version 1.0: 2024-01-24
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.