Download MendeleyCrystal structure of Trichoplax Dlg PDZ1 domain in complex with Trichoplax Vangl peptide
Maddumage, J.C., Kvansakul, M.To be published.
8C1T
Crystal structure of Trichoplax Dlg PDZ1 domain in complex with Trichoplax Vangl peptide
- PDB DOI: https://doi.org/10.2210/pdb8C1T/pdb
- Classification: PROTEIN BINDING
- Organism(s): Trichoplax sp. H2
- Expression System: Escherichia coli BL21
- Mutation(s): No
- Deposited: 2022-12-21 Released: 2024-01-10
- Funding Organization(s): National Health and Medical Research Council (NHMRC, Australia), Australian Research Council (ARC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.264
- R-Value Work: 0.211
- R-Value Observed: 0.214
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Disks large-like protein 1 | A [auth D], B [auth A], C [auth B], D [auth C] | 94 | Trichoplax sp. H2 | Mutation(s): 0 Gene Names: TrispH2_000924 |  |
UniProt | |||||
Find proteins for A0A369SI82 (Trichoplax sp. H2) Explore A0A369SI82 Go to UniProtKB: A0A369SI82 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A369SI82 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Vang-like protein 1 | 8 | Trichoplax sp. H2 | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for A0A369S4B9 (Trichoplax sp. H2) Explore A0A369S4B9 Go to UniProtKB: A0A369S4B9 | |||||
Entity Groups | |||||
| UniProt Group | A0A369S4B9 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MLA (Subject of Investigation/LOI) Query on MLA | I [auth B], J [auth B], K [auth C] | MALONIC ACID C3 H4 O4 OFOBLEOULBTSOW-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.264
- R-Value Work: 0.211
- R-Value Observed: 0.214
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 34.696 | α = 85.25 |
| b = 47.953 | β = 72.08 |
| c = 50.83 | γ = 69.17 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| DIALS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-01-10 Deposition Author(s): Maddumage, J.C., Kvansakul, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Health and Medical Research Council (NHMRC, Australia) | Australia | APP1103871 |
| Australian Research Council (ARC) | Australia | FT130101349 |
Revision History (Full details and data files)
- Version 1.0: 2024-01-10
Type: Initial release
