8C1B

Deposited: 2022-12-20 Released: 2023-03-29
Deposition Author(s): Andersen, G.R., Jensen, R.K.
Funding Organization(s): Novo Nordisk Foundation, Lundbeckfonden, Danish Council for Independent Research

Experimental Data Snapshot

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Macromolecule Content

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Immunoglobulin heavy constant epsilon	A [auth H], C [auth X]	319	Homo sapiens	Mutation(s): 0 Gene Names: IGHE
UniProt & NIH Common Fund Data Resources
Find proteins for P01854 (Homo sapiens) Explore P01854 Go to UniProtKB: P01854
PHAROS: P01854 GTEx: ENSG00000211891
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P01854
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain A [auth H] Focus chain C [auth X]	Go to GlyGen: P01854-2
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
High affinity immunoglobulin epsilon receptor subunit alpha	B [auth R]	169	Homo sapiens	Mutation(s): 0 Gene Names: FCER1A, FCE1A
UniProt & NIH Common Fund Data Resources
Find proteins for P12319 (Homo sapiens) Explore P12319 Go to UniProtKB: P12319
PHAROS: P12319 GTEx: ENSG00000179639
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P12319
Glycosylation
Glycosylation Sites: 4	Glycosylation Focus chain B [auth R]	Go to GlyGen: P12319-1
Sequence Annotations Expand
Reference Sequence

Oligosaccharides

Entity ID: 3
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	D [auth A], F [auth C]	5		N-Glycosylation	Interactions Focus chain D [auth A] Focus chain F [auth C] Interactions & Density Focus chain D [auth A] Focus chain F [auth C]
Glycosylation Resources
GlyTouCan: G22768VO GlyCosmos: G22768VO GlyGen: G22768VO

Entity ID: 4
Molecule	Chains	Length	2D Diagram	Glycosylation	3D Interactions
alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	E [auth B]	3		N-Glycosylation	Interactions Focus chain E [auth B] Interactions & Density Focus chain E [auth B]
Glycosylation Resources
GlyTouCan: G62182OO GlyCosmos: G62182OO GlyGen: G62182OO

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAG Query on NAG Download Ideal Coordinates CCD File SDF format, chain G [auth R] SDF format, chain I [auth R] SDF format, chain H [auth R] MOL2 format, chain G [auth R] MOL2 format, chain I [auth R] MOL2 format, chain H [auth R] mmCIF format, chain G [auth R] mmCIF format, chain I [auth R] mmCIF format, chain H [auth R]	G [auth R], H [auth R], I [auth R]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain G [auth R] Focus chain H [auth R] Focus chain I [auth R] Interactions & Density Focus chain G [auth R] Focus chain H [auth R] Focus chain I [auth R]