Download MendeleyLinked-fragment stabilizers of 14-3-3 protein-protein interactions
Visser, E.J., Jaishankar, P., Sijbesma, E., Pennings, M.A.M., Vandenboorn, E.M.F., Renslo, A., Arkin, M.R., Brunsveld, L., Ottmann, C.To be published.
8BZC
co-soaked stabilizers for ERa - 14-3-3 interaction (884_AZ244)
- PDB DOI: https://doi.org/10.2210/pdb8BZC/pdb
- Classification: STRUCTURAL PROTEIN
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2022-12-14 Released: 2023-12-27
- Funding Organization(s): Netherlands Organisation for Scientific Research (NWO)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.10 Å
- R-Value Free: 0.177
- R-Value Work: 0.172
- R-Value Observed: 0.172
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 14-3-3 protein sigma | 236 | Homo sapiens | Mutation(s): 2 Gene Names: SFN, HME1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P31947 (Homo sapiens) Explore P31947 Go to UniProtKB: P31947 | |||||
PHAROS: P31947 GTEx: ENSG00000175793 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P31947 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ERalpha peptide | 5 | Homo sapiens | Mutation(s): 0 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P03372 (Homo sapiens) Explore P03372 Go to UniProtKB: P03372 | |||||
PHAROS: P03372 GTEx: ENSG00000091831 | |||||
Entity Groups | |||||
| UniProt Group | P03372 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SG0 (Subject of Investigation/LOI) Query on SG0 | G [auth A] | 4-[(~{R})-azanyl(oxidanyl)methyl]-7-propan-2-yloxy-1-benzothiophene-2-carboximidamide C13 H17 N3 O2 S AHQCRVYDVIFTJY-CYBMUJFWSA-N |  | ||
| GEH (Subject of Investigation/LOI) Query on GEH | F [auth A] | 2-(4-chloranylphenoxy)-2-methyl-~{N}-(2-sulfanylethyl)propanamide C12 H16 Cl N O2 S NDZCOUBEYALMJI-UHFFFAOYSA-N |  | ||
| MG Query on MG | C [auth A], D [auth A], E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| TPO Query on TPO | B | L-PEPTIDE LINKING | C4 H10 N O6 P |  | THR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.10 Å
- R-Value Free: 0.177
- R-Value Work: 0.172
- R-Value Observed: 0.172
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 81.723 | α = 90 |
| b = 112.327 | β = 90 |
| c = 62.374 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-12-27 Deposition Author(s): Visser, E.J., Sijbesma, E., Ottmann, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Netherlands Organisation for Scientific Research (NWO) | Netherlands | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-12-27
Type: Initial release
