8BXA

Crystal structure of ribosome binding factor A (RbfA) from S. aureus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.22 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.201 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Yet Another Similarity between Mitochondrial and Bacterial Ribosomal Small Subunit Biogenesis Obtained by Structural Characterization of RbfA from S. aureus.

Bikmullin, A.G.Fatkhullin, B.Stetsenko, A.Gabdulkhakov, A.Garaeva, N.Nurullina, L.Klochkova, E.Golubev, A.Khusainov, I.Trachtmann, N.Blokhin, D.Guskov, A.Validov, S.Usachev, K.Yusupov, M.

(2023) Int J Mol Sci 24

  • DOI: https://doi.org/10.3390/ijms24032118
  • Primary Citation of Related Structures:  
    8BXA

  • PubMed Abstract: 

    Ribosome biogenesis is a complex and highly accurate conservative process of ribosomal subunit maturation followed by association. Subunit maturation comprises sequential stages of ribosomal RNA and proteins' folding, modification and binding, with the involvement of numerous RNAses, helicases, GTPases, chaperones, RNA, protein-modifying enzymes, and assembly factors. One such assembly factor involved in bacterial 30S subunit maturation is ribosomal binding factor A (RbfA). In this study, we present the crystal (determined at 2.2 Å resolution) and NMR structures of RbfA as well as the 2.9 Å resolution cryo-EM reconstruction of the 30S-RbfA complex from Staphylococcus aureus ( S. aureus ). Additionally, we show that the manner of RbfA action on the small ribosomal subunit during its maturation is shared between bacteria and mitochondria. The obtained results clarify the function of RbfA in the 30S maturation process and its role in ribosome functioning in general. Furthermore, given that S. aureus is a serious human pathogen, this study provides an additional prospect to develop antimicrobials targeting bacterial pathogens.


  • Organizational Affiliation

    Laboratory of Structural Biology, Institute of Fundamental Medicine and Biology, Kazan Federal University, 420021 Kazan, Russia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosome-binding factor A116Staphylococcus aureus subsp. aureus NCTC 8325Mutation(s): 0 
Gene Names: rbfASAOUHSC_01247
UniProt
Find proteins for Q2G2Q4 (Staphylococcus aureus (strain NCTC 8325 / PS 47))
Explore Q2G2Q4 
Go to UniProtKB:  Q2G2Q4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ2G2Q4
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.22 Å
  • R-Value Free: 0.247 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.201 
  • Space Group: P 41
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.315α = 90
b = 65.315β = 90
c = 27.287γ = 90
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Foundation for Basic ResearchRussian Federation20-54-15001

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-22
    Type: Initial release