8BW8

Crystal structure of the dCNK-SAM-CRIC-PDZ/dHYP-SAM complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.190 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

The CNK-HYP scaffolding complex promotes RAF activation by enhancing KSR-MEK interaction.

Maisonneuve, P.Sahmi, M.Bergeron-Labrecque, F.Ma, X.I.Queguiner, J.Arseneault, G.Lefrancois, M.Kurinov, I.Fronzes, R.Sicheri, F.Therrien, M.

(2024) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-024-01233-6
  • Primary Citation of Related Structures:  
    8BW8, 8BW9

  • PubMed Abstract: 

    The RAS-MAPK pathway regulates cell proliferation, differentiation and survival, and its dysregulation is associated with cancer development. The pathway minimally comprises the small GTPase RAS and the kinases RAF, MEK and ERK. Activation of RAF by RAS is notoriously intricate and remains only partially understood. There are three RAF isoforms in mammals (ARAF, BRAF and CRAF) and two related pseudokinases (KSR1 and KSR2). RAS-mediated activation of RAF depends on an allosteric mechanism driven by the dimerization of its kinase domain. Recent work on human RAFs showed that MEK binding to KSR1 promotes KSR1-BRAF heterodimerization, which leads to the phosphorylation of free MEK molecules by BRAF. Similar findings were made with the single Drosophila RAF homolog. Here we show that the fly scaffold proteins CNK and HYP stabilize the KSR-MEK interaction, which in turn enhances RAF-KSR heterodimerization and RAF activation. The cryogenic electron microscopy structure of the minimal KSR-MEK-CNK-HYP complex reveals a ring-like arrangement of the CNK-HYP complex allowing CNK to simultaneously engage KSR and MEK, thus stabilizing the binary interaction. Together, these results illuminate how CNK contributes to RAF activation by stimulating the allosteric function of KSR and highlight the diversity of mechanisms impacting RAF dimerization as well as the regulatory potential of the KSR-MEK interaction.


  • Organizational Affiliation

    Université de Bordeaux, CNRS, Bordeaux INP, CBMN, UMR 5248, IECB, F-33600, Pessac, France. p.maisonneuve@iecb.u-bordeaux.fr.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein aveugle
A, C, E
110Drosophila melanogasterMutation(s): 0 
Gene Names: aveCG30476
UniProt
Find proteins for Q8ML92 (Drosophila melanogaster)
Explore Q8ML92 
Go to UniProtKB:  Q8ML92
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ML92
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Connector enhancer of KSR protein CNK
B, D, F
335Drosophila melanogasterMutation(s): 0 
Gene Names: 
UniProt
Find proteins for Q7KNQ9 (Drosophila melanogaster)
Explore Q7KNQ9 
Go to UniProtKB:  Q7KNQ9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7KNQ9
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 0.219 
  • R-Value Work: 0.188 
  • R-Value Observed: 0.190 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 131.907α = 90
b = 131.907β = 90
c = 71.465γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
HKL2Mapphasing
PHASERphasing
SHELXDEphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaFRN-414829
Canadian Institutes of Health Research (CIHR)CanadaFDN-143277

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-21
    Type: Initial release
  • Version 1.1: 2024-02-28
    Changes: Database references
  • Version 1.2: 2024-03-06
    Changes: Database references