8BW4

PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative

• PDB DOI: https://doi.org/10.2210/pdb8BW4/pdb
• Entry: 8BW4 supersedes: 5S9I

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2022-12-06 Released: 2022-12-21 
• Deposition Author(s): Grosjean, H., Aimon, A., Hassell-Hart, S., Bradshaw, W.J., Krojer, T., Talon, R., Douangamath, A., Koekemoer, L., Biggin, P.C., Spencer, J., von Delft, F.
• Funding Organization(s): Wellcome Trust

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.316 
• R-Value Work: 0.235 

Literature

PanDDA analysis -- Crystal Structure of PHIP in complex with Z198194396 synthetic derivative

Grosjean, H., Aimon, A., Hassell-Hart, S., Bradshaw, W.J., Krojer, T., Talon, R., Douangamath, A., Koekemoer, L., Biggin, P.C., Spencer, J., von Delft, F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 18.01 kDa 
• Atom Count: 1,166 
• Modelled Residue Count: 119 
• Deposited Residue Count: 149 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PH-interacting protein	A	149	Homo sapiens	Mutation(s): 0  Gene Names: PHIP, DCAF14, WDR11
UniProt & NIH Common Fund Data Resources
Find proteins for Q8WWQ0 (Homo sapiens) Explore Q8WWQ0  Go to UniProtKB:  Q8WWQ0
PHAROS:  Q8WWQ0 GTEx:  ENSG00000146247

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
Y3S (Subject of Investigation/LOI)	B [auth A]	(2R)-4-(3-fluoranylthiophen-2-yl)carbonyl-N-(4-methoxyphenyl)-2-methyl-piperazine-1-carboxamide C18 H20 F N3 O3 S IFZPOZKASMLFRK-GFCCVEGCSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.55 Å
• R-Value Free: 0.316 
• R-Value Work: 0.235 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 81.789	α = 90
b = 27.009	β = 99.944
c = 55.563	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-12-21 
Deposition Author(s): Grosjean, H., Aimon, A., Hassell-Hart, S., Bradshaw, W.J., Krojer, T., Talon, R., Douangamath, A., Koekemoer, L., Biggin, P.C., Spencer, J., von Delft, F.
• This entry supersedes: 5S9I

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Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	--

Revision History  

• Version 1.0: 2022-12-21
  Type: Initial release
  
• Version 1.1: 2024-02-07
  Changes: Data collection