8BUX | pdb_00008bux

Rab-binding domain of human MiniBAR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 
    0.214 (Depositor), 0.214 (DCC) 
  • R-Value Work: 
    0.165 (Depositor), 0.166 (DCC) 
  • R-Value Observed: 
    0.167 (Depositor) 

Starting Model: other
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wwPDB Validation 3D Report Full Report

Validation slider image for 8BUX

This is version 1.2 of the entry. See complete history

Literature

MiniBAR/GARRE1 is a dual Rac and Rab effector required for ciliogenesis.

Serres, M.P.Shaughnessy, R.Escot, S.Hammich, H.Cuvelier, F.Salles, A.Rocancourt, M.Verdon, Q.Gaffuri, A.L.Sourigues, Y.Malherbe, G.Velikovsky, L.Chardon, F.Sassoon, N.Tinevez, J.Y.Callebaut, I.Formstecher, E.Houdusse, A.David, N.B.Pylypenko, O.Echard, A.

(2023) Dev Cell 58: 2477-2494.e8

  • DOI: https://doi.org/10.1016/j.devcel.2023.09.010
  • Primary Citation Related Structures: 
    8BUX, 8BUY

  • PubMed Abstract: 

    Cilia protrude from the cell surface and play critical roles in intracellular signaling, environmental sensing, and development. Reduced actin-dependent contractility and intracellular trafficking are both required for ciliogenesis, but little is known about how these processes are coordinated. Here, we identified a Rac1- and Rab35-binding protein with a truncated BAR (Bin/amphiphysin/Rvs) domain that we named MiniBAR (also known as KIAA0355/GARRE1), which plays a key role in ciliogenesis. MiniBAR colocalizes with Rac1 and Rab35 at the plasma membrane and on intracellular vesicles trafficking to the ciliary base and exhibits fast pulses at the ciliary membrane. MiniBAR depletion leads to short cilia, resulting from abnormal Rac-GTP/Rho-GTP levels and increased acto-myosin-II-dependent contractility together with defective trafficking of IFT88 and ARL13B into cilia. MiniBAR-depleted zebrafish embryos display dysfunctional short cilia and hallmarks of ciliopathies, including left-right asymmetry defects. Thus, MiniBAR is a dual Rac and Rab effector that controls both actin cytoskeleton and membrane trafficking for ciliogenesis.


  • Organizational Affiliation
    • Institut Pasteur, Université de Paris, CNRS UMR3691, Membrane Traffic and Cell Division Laboratory, 25-28 rue du Dr Roux, 75015 Paris, France.

Macromolecule Content 

  • Total Structure Weight: 36.89 kDa 
  • Atom Count: 2,473 
  • Modeled Residue Count: 289 
  • Deposited Residue Count: 334 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Granule associated Rac and RHOG effector protein 1334Homo sapiensMutation(s): 0 
Gene Names: GARRE1KIAA0355
UniProt & NIH Common Fund Data Resources
Find proteins for O15063 (Homo sapiens)
Explore O15063 
Go to UniProtKB:  O15063
PHAROS:  O15063
GTEx:  ENSG00000166398 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15063
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free:  0.214 (Depositor), 0.214 (DCC) 
  • R-Value Work:  0.165 (Depositor), 0.166 (DCC) 
  • R-Value Observed: 0.167 (Depositor) 
Space Group: P 21 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.388α = 90
b = 123.956β = 90
c = 38.068γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata reduction
autoPROCdata scaling
SHELXDphasing

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-18-CE13-0024-02
Agence Nationale de la Recherche (ANR)FranceANR-20-CE18-0016-02

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-13
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Structure summary
  • Version 1.2: 2025-06-25
    Changes: Database references