8BS7 | pdb_00008bs7

Multimerisation domain of Borna disease virus 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free: 
    0.387 (Depositor), 0.379 (DCC) 
  • R-Value Work: 
    0.335 (Depositor), 0.337 (DCC) 
  • R-Value Observed: 
    0.338 (Depositor) 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history

Literature

Structural and biophysical characterization of the Borna disease virus 1 phosphoprotein.

Whitehead, J.D.Grimes, J.M.Keown, J.R.

(2023) Acta Crystallogr F Struct Biol Commun 79: 51-60

  • DOI: https://doi.org/10.1107/S2053230X23000717
  • Primary Citation Related Structures: 
    8BS7

  • PubMed Abstract: 

    Bornaviruses are RNA viruses with a mammalian, reptilian, and avian host range. The viruses infect neuronal cells and in rare cases cause a lethal encephalitis. The family Bornaviridae are part of the Mononegavirales order of viruses, which contain a nonsegmented viral genome. Mononegavirales encode a viral phosphoprotein (P) that binds both the viral polymerase (L) and the viral nucleoprotein (N). The P protein acts as a molecular chaperone and is required for the formation of a functional replication/transcription complex. In this study, the structure of the oligomerization domain of the phosphoprotein determined by X-ray crystallography is reported. The structural results are complemented with biophysical characterization using circular dichroism, differential scanning calorimetry and small-angle X-ray scattering. The data reveal the phosphoprotein to assemble into a stable tetramer, with the regions outside the oligomerization domain remaining highly flexible. A helix-breaking motif is observed between the α-helices at the midpoint of the oligomerization domain that appears to be conserved across the Bornaviridae. These data provide information on an important component of the bornavirus replication complex.


  • Organizational Affiliation
    • Division of Structural Biology, Wellcome Trust Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.

Macromolecule Content 

  • Total Structure Weight: 196.83 kDa 
  • Atom Count: 4,525 
  • Modeled Residue Count: 589 
  • Deposited Residue Count: 1,736 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Phosphoprotein
A, B, C, D, E
A, B, C, D, E, F, G, H
217Borna disease virus 1Mutation(s): 0 
Gene Names: P/X
UniProt
Find proteins for P0C799 (Borna disease virus (strain V))
Explore P0C799 
Go to UniProtKB:  P0C799
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0C799
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.20 Å
  • R-Value Free:  0.387 (Depositor), 0.379 (DCC) 
  • R-Value Work:  0.335 (Depositor), 0.337 (DCC) 
  • R-Value Observed: 0.338 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 34.873α = 89.97
b = 35.154β = 90.01
c = 153.125γ = 90.54
Software Package:
Software NamePurpose
PHENIXrefinement
autoPROCdata scaling
PHASERphasing
autoPROCdata reduction

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom200835/Z/16/Z

Revision History  (Full details and data files)

  • Version 1.0: 2023-04-05
    Type: Initial release
  • Version 1.1: 2024-06-19
    Changes: Data collection