8BQ1 | pdb_00008bq1

Herpes simplex virus type 1 protease

PDB DOI: https://doi.org/10.2210/pdb8BQ1/pdb

Classification: VIRAL PROTEIN
Organism(s): Human alphaherpesvirus 1 strain 17
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-11-18 Released: 2023-11-29
Deposition Author(s): Pachota, M., Grzywa, R., Plewka, J., Wilk, P., Mackereth, C., Czarna, A., Sienczyk, M., Pyrc, K.
Funding Organization(s): Polish National Science Centre, Foundation for Polish Science

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.32 Å
R-Value Free:
0.244 (Depositor), 0.230 (DCC)
R-Value Work:
0.195 (Depositor), 0.190 (DCC)
R-Value Observed:
0.197 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Herpes simplex virus type 1 protease

Pachota, M.

To be published.

Macromolecule Content

Total Structure Weight: 26.74 kDa
Atom Count: 1,504
Modeled Residue Count: 194
Deposited Residue Count: 247
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Assemblin	A	247	Human alphaherpesvirus 1 strain 17	Mutation(s): 0 Gene Names: UL26 EC: 3.4.21.97
UniProt
Find proteins for P10210 (Human herpesvirus 1 (strain 17)) Explore P10210 Go to UniProtKB: P10210
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P10210
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.32 Å
R-Value Free: 0.244 (Depositor), 0.230 (DCC)
R-Value Work: 0.195 (Depositor), 0.190 (DCC)
R-Value Observed: 0.197 (Depositor)

Space Group: P 6₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.08	α = 90
b = 70.08	β = 90
c = 77.33	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
PHASER	phasing
PHENIX	refinement
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-11-29

Deposition Author(s):

Funding Organization	Location	Grant Number
Polish National Science Centre	Poland	2017/27/N/NZ6/02328
Foundation for Polish Science	Poland	TEAM TECH CORE FACILITY/2017-4/6

Revision History (Full details and data files)

Version 1.0: 2023-11-29
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.