8BMW

SsoCsm


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

Structure of the Saccharolobus solfataricus type III-D CRISPR effector.

Cannone, G.Kompaniiets, D.Graham, S.White, M.F.Spagnolo, L.

(2023) Curr Res Struct Biol 5: 100098-100098

  • DOI: https://doi.org/10.1016/j.crstbi.2023.100098
  • Primary Citation of Related Structures:  
    8BMW

  • PubMed Abstract: 

    CRISPR-Cas is a prokaryotic adaptive immune system, classified into six different types, each characterised by a signature protein. Type III systems, classified based on the presence of a Cas10 subunit, are rather diverse multi-subunit assemblies with a range of enzymatic activities and downstream ancillary effectors. The broad array of current biotechnological CRISPR applications is mainly based on proteins classified as Type II, however recent developments established the feasibility and efficacy of multi-protein Type III CRISPR-Cas effector complexes as RNA-targeting tools in eukaryotes. The crenarchaeon Saccharolobus solfataricus has two type III system subtypes (III-B and III-D). Here, we report the cryo-EM structure of the Csm Type III-D complex from S. solfataricus (SsoCsm), which uses CRISPR RNA to bind target RNA molecules, activating the Cas10 subunit for antiviral defence. The structure reveals the complex organisation, subunit/subunit connectivity and protein/guide RNA interactions of the SsoCsm complex, one of the largest CRISPR effectors known.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge, CB2 0QH, United Kingdom.


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated small subunit protein (Type III-D)
A, B, C, D, E
139Saccharolobus solfataricusMutation(s): 0 
UniProt
Find proteins for Q97YA8 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated Cas7 paralog (Type III-D)F [auth J]272Saccharolobus solfataricusMutation(s): 0 
UniProt
Find proteins for Q97YA5 (Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2))
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated Cas7 paralog (Type III-D)G [auth L]202Saccharolobus solfataricusMutation(s): 0 
UniProt
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated Cas7 paralog (Type III-D)H [auth N]252Saccharolobus solfataricusMutation(s): 0 
UniProt
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated Cas7 paralog (Type III-D)J [auth G],
K [auth F]
248Saccharolobus solfataricusMutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated Cas7 paralog (Type III-D)L [auth H],
M [auth I]
278Saccharolobus solfataricusMutation(s): 0 
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated protein Cas10 (Type III-D)N [auth K]829Saccharolobus solfataricusMutation(s): 0 
UniProt
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UniProt GroupsQ97YA3Q97YA4
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
CRISPR-associated protein Cas5 (Type III-D)O [auth M]300Saccharolobus solfataricusMutation(s): 0 
UniProt
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Entity ID: 5
MoleculeChains LengthOrganismImage
RNA (48-MER)I [auth R]48Saccharolobus solfataricus
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/J005673/1
European Research Council (ERC)European Union101018608

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-01
    Type: Initial release
  • Version 1.1: 2023-03-22
    Changes: Database references