8BEX

Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein at pH 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 

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This is version 1.1 of the entry. See complete history


Literature

Structure of the Lysinibacillus sphaericus Tpp49Aa1 pesticidal protein elucidated from natural crystals using MHz-SFX.

Williamson, L.J.Galchenkova, M.Best, H.L.Bean, R.J.Munke, A.Awel, S.Pena, G.Knoska, J.Schubert, R.Dorner, K.Park, H.W.Bideshi, D.K.Henkel, A.Kremling, V.Klopprogge, B.Lloyd-Evans, E.Young, M.T.Valerio, J.Kloos, M.Sikorski, M.Mills, G.Bielecki, J.Kirkwood, H.Kim, C.de Wijn, R.Lorenzen, K.Xavier, P.L.Rahmani Mashhour, A.Gelisio, L.Yefanov, O.Mancuso, A.P.Federici, B.A.Chapman, H.N.Crickmore, N.Rizkallah, P.J.Berry, C.Oberthur, D.

(2023) Proc Natl Acad Sci U S A 120: e2203241120-e2203241120

  • DOI: https://doi.org/10.1073/pnas.2203241120
  • Primary Citation of Related Structures:  
    8BEX, 8BEY, 8BEZ

  • PubMed Abstract: 

    The Lysinibacillus sphaericus proteins Tpp49Aa1 and Cry48Aa1 can together act as a toxin toward the mosquito Culex quinquefasciatus and have potential use in biocontrol. Given that proteins with sequence homology to the individual proteins can have activity alone against other insect species, the structure of Tpp49Aa1 was solved in order to understand this protein more fully and inform the design of improved biopesticides. Tpp49Aa1 is naturally expressed as a crystalline inclusion within the host bacterium, and MHz serial femtosecond crystallography using the novel nanofocus option at an X-ray free electron laser allowed rapid and high-quality data collection to determine the structure of Tpp49Aa1 at 1.62 Å resolution. This revealed the packing of Tpp49Aa1 within these natural nanocrystals as a homodimer with a large intermolecular interface. Complementary experiments conducted at varied pH also enabled investigation of the early structural events leading up to the dissolution of natural Tpp49Aa1 crystals-a crucial step in its mechanism of action. To better understand the cooperation between the two proteins, assays were performed on a range of different mosquito cell lines using both individual proteins and mixtures of the two. Finally, bioassays demonstrated Tpp49Aa1/Cry48Aa1 susceptibility of Anopheles stephensi , Aedes albopictus, and Culex tarsalis larvae-substantially increasing the potential use of this binary toxin in mosquito control.


  • Organizational Affiliation

    School of Biosciences, Cardiff University, Cardiff CF10 3AX, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cry49Aa protein
A, B
416Lysinibacillus sphaericusMutation(s): 0 
Gene Names: Cry49Aa1cry49Aa
UniProt
Find proteins for A7WK53 (Lysinibacillus sphaericus)
Explore A7WK53 
Go to UniProtKB:  A7WK53
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA7WK53
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.190 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 79.89α = 90
b = 82.84β = 90
c = 157.88γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PHASERphasing
PDB_EXTRACTdata extraction
CrystFELdata reduction
CrystFELdata scaling

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/M009122/1
Biotechnology and Biological Sciences Research Council (BBSRC)United KingdomBB/S002774/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-01
    Type: Initial release
  • Version 1.1: 2023-12-06
    Changes: Database references