Download MendeleyHuman cathepsin B in complex with the carbamate inhibitor 31
Rubesova, P., Guetschow, M., Mares, M.To be published.
8B5F
Human cathepsin B in complex with the carbamate inhibitor 31
- PDB DOI: https://doi.org/10.2210/pdb8B5F/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Komagataella pastoris
- Mutation(s): Yes
- Deposited: 2022-09-22 Released: 2023-10-04
- Funding Organization(s): Ministry of Education, Youth and Sports of the Czech Republic, European Regional Development Fund
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.205
- R-Value Work: 0.175
- R-Value Observed: 0.176
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Cathepsin B | 255 | Homo sapiens | Mutation(s): 1 Gene Names: CTSB, CPSB EC: 3.4.22.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P07858 (Homo sapiens) Explore P07858 Go to UniProtKB: P07858 | |||||
PHAROS: P07858 GTEx: ENSG00000164733 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07858 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| P9U (Subject of Investigation/LOI) Query on P9U | B [auth A] | (2S)-2-[[(2S)-2-[[3-chloranyl-4-[[3-phenyl-2-(phenylmethyl)propanoyl]amino]phenoxy]carbonylamino]-3-cyclohexyl-propanoyl]amino]-3-phenyl-propanoic acid C41 H44 Cl N3 O6 YPHQKMBBCYVKBP-BCRBLDSWSA-N |  | ||
| EDO Query on EDO | C [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.205
- R-Value Work: 0.175
- R-Value Observed: 0.176
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 30.573 | α = 90 |
| b = 81.565 | β = 90 |
| c = 93.52 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-10-04 Deposition Author(s): Rubesova, P., Guetschow, M., Mares, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Ministry of Education, Youth and Sports of the Czech Republic | Czech Republic | -- |
| European Regional Development Fund | European Union | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-10-04
Type: Initial release
