Download MendeleyStructure of SARS-CoV-2 NSP3 macrodomain in the apo form
Sander, S., Tidow, H., Fliegert, R., Sandmann, M.To be published.
8AZC
Structure of SARS-CoV-2 NSP3 macrodomain in the apo form
- PDB DOI: https://doi.org/10.2210/pdb8AZC/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Severe acute respiratory syndrome coronavirus 2
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-09-05 Released: 2023-09-13
- Funding Organization(s): German Research Foundation (DFG)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.93 Å
- R-Value Free: 0.153
- R-Value Work: 0.143
- R-Value Observed: 0.143
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Papain-like protease nsp3 | 179 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0 EC: 3.4.19.12 (PDB Primary Data), 3.4.22 (PDB Primary Data) |  | |
UniProt | |||||
Find proteins for P0DTC1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC1 Go to UniProtKB: P0DTC1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0DTC1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPO (Subject of Investigation/LOI) Query on MPO | C [auth A] | 3[N-MORPHOLINO]PROPANE SULFONIC ACID C7 H15 N O4 S DVLFYONBTKHTER-UHFFFAOYSA-N |  | ||
| CL Query on CL | B [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.93 Å
- R-Value Free: 0.153
- R-Value Work: 0.143
- R-Value Observed: 0.143
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 129.797 | α = 90 |
| b = 30.17 | β = 96.76 |
| c = 39.484 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
| Coot | model building |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-09-13 Deposition Author(s): Sander, S., Tidow, H., Fliegert, R., Sandmann, M.
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation (DFG) | Germany | SFB 1328 |
Revision History (Full details and data files)
- Version 1.0: 2023-09-13
Type: Initial release
