8ASK

Crystal structure of d(GCCCACCACGGC)

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.125 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history. 


Literature

Structural Characterization of Alzheimer DNA Promoter Sequences from the Amyloid Precursor Gene in the Presence of Thioflavin T and Analogs

Sbirkova-Dimitrova, H., Rusew, R., Kuvandjiev, N., Heroux, A., Doukov, T., Shivachev, B.L.

(2022) Crystals (Basel) 12


Macromolecules

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Entity ID: 1
MoleculeChains LengthOrganismImage
DNA (5'-D(P*GP*CP*CP*CP*AP*CP*CP*AP*CP*GP*GP*C)-3')A [auth AAA]12DNA molecule
Sequence Annotations
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  • Reference Sequence

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Entity ID: 2
MoleculeChains LengthOrganismImage
DNA (5'-D(P*GP*CP*CP*GP*TP*GP*GP*TP*GP*GP*GP*C)-3')B [auth BBB]12DNA molecule
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.125 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 64.49α = 90
b = 64.49β = 90
c = 46.19γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
The Bulgarian National Science Fund (BNSF)BulgariaKP-06-M31/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release