8AR6

Structure of Delta 57-NCOA7 in space group P41212


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.194 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Protein-to-structure pipeline for ambient-temperature in situ crystallography at VMXi.

Mikolajek, H.Sanchez-Weatherby, J.Sandy, J.Gildea, R.J.Campeotto, I.Cheruvara, H.Clarke, J.D.Foster, T.Fujii, S.Paulsen, I.T.Shah, B.S.Hough, M.A.

(2023) IUCrJ 10: 420-429

  • DOI: https://doi.org/10.1107/S2052252523003810
  • Primary Citation of Related Structures:  
    7ZCK, 8A9D, 8AR6, 8AR9, 8BRK, 8BRL, 8CIF

  • PubMed Abstract: 

    The utility of X-ray crystal structures determined under ambient-temperature conditions is becoming increasingly recognized. Such experiments can allow protein dynamics to be characterized and are particularly well suited to challenging protein targets that may form fragile crystals that are difficult to cryo-cool. Room-temperature data collection also enables time-resolved experiments. In contrast to the high-throughput highly automated pipelines for determination of structures at cryogenic temperatures widely available at synchrotron beamlines, room-temperature methodology is less mature. Here, the current status of the fully automated ambient-temperature beamline VMXi at Diamond Light Source is described, and a highly efficient pipeline from protein sample to final multi-crystal data analysis and structure determination is shown. The capability of the pipeline is illustrated using a range of user case studies representing different challenges, and from high and lower symmetry space groups and varied crystal sizes. It is also demonstrated that very rapid structure determination from crystals in situ within crystallization plates is now routine with minimal user intervention.


  • Organizational Affiliation

    Diamond Light Source Ltd, Harwell Science and Innovation Campus, Didcot OX11 0DE, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nuclear receptor coactivator 7
A, B, C
183Homo sapiensMutation(s): 0 
Gene Names: NCOA7ERAP140ESNA1Nbla00052Nbla10993
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NI08 (Homo sapiens)
Explore Q8NI08 
Go to UniProtKB:  Q8NI08
PHAROS:  Q8NI08
GTEx:  ENSG00000111912 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NI08
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.238 
  • R-Value Work: 0.191 
  • R-Value Observed: 0.194 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.623α = 90
b = 89.623β = 90
c = 165.897γ = 90
Software Package:
Software NamePurpose
Aimlessdata scaling
PHENIXrefinement
xia2data reduction
PHASERphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom217414/Z/19/Z

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-24
    Type: Initial release
  • Version 1.1: 2023-05-31
    Changes: Database references
  • Version 1.2: 2023-07-19
    Changes: Data collection, Database references
  • Version 1.3: 2024-02-07
    Changes: Data collection, Refinement description