8AR3

Solution structure of TLR9 transmembrane and cytoplasmic juxtamembrane regions


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The architecture of transmembrane and cytoplasmic juxtamembrane regions of Toll-like receptors.

Kornilov, F.D.Shabalkina, A.V.Lin, C.Volynsky, P.E.Kot, E.F.Kayushin, A.L.Lushpa, V.A.Goncharuk, M.V.Arseniev, A.S.Goncharuk, S.A.Wang, X.Mineev, K.S.

(2023) Nat Commun 14: 1503-1503

  • DOI: https://doi.org/10.1038/s41467-023-37042-6
  • Primary Citation of Related Structures:  
    8AR0, 8AR1, 8AR2, 8AR3

  • PubMed Abstract: 

    Toll-like receptors (TLRs) are the important participants of the innate immune response. Their spatial organization is well studied for the ligand-binding domains, while a lot of questions remain unanswered for the membrane and cytoplasmic regions of the proteins. Here we use solution NMR spectroscopy and computer simulations to investigate the spatial structures of transmembrane and cytoplasmic juxtamembrane regions of TLR2, TLR3, TLR5, and TLR9. According to our data, all the proteins reveal the presence of a previously unreported structural element, the cytoplasmic hydrophobic juxtamembrane α-helix. As indicated by the functional tests in living cells and bioinformatic analysis, this helix is important for receptor activation and plays a role, more complicated than a linker, connecting the transmembrane and cytoplasmic parts of the proteins.


  • Organizational Affiliation

    Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, 117997, Russia.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Toll-like receptor 950Homo sapiensMutation(s): 0 
Gene Names: TLR9UNQ5798/PRO19605
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NR96 (Homo sapiens)
Explore Q9NR96 
Go to UniProtKB:  Q9NR96
PHAROS:  Q9NR96
GTEx:  ENSG00000239732 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NR96
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation22-14-0020

Revision History  (Full details and data files)

  • Version 1.0: 2023-03-22
    Type: Initial release
  • Version 1.1: 2023-03-29
    Changes: Database references