8ANY

Human mitochondrial ribosome in complex with LRPPRC, SLIRP, A-site, P-site, E-site tRNAs and mRNA

• PDB DOI: https://doi.org/10.2210/pdb8ANY/pdb
• EM Map EMD-15544: EMDB EMDataResource
• NAKB: 8ANY

• Classification: RIBOSOME
• Organism(s): Homo sapiens
• Mutation(s): Yes 


• Deposited: 2022-08-06 Released: 2023-08-16 
• Deposition Author(s): Singh, V., Itoh, Y., Amunts, A.
• Funding Organization(s): Swedish Research Council, Knut and Alice Wallenberg Foundation, European Research Council (ERC), European Molecular Biology Organization (EMBO), H2020 Marie Curie Actions of the European Commission

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.85 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural basis of LRPPRC-SLIRP-dependent translation by the mitoribosome

Singh, V., Conor, J., Itoh, Y., Soto, T., Fontanesi, F., Couvillian, M., Huynen, M., Churchman, S., Barrientos, A., Amunts, A.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 89-mer - AA5AB1AC1AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1Ba1Bb1Bc1Bd1Be1Bf1Bg1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 89-mer - AA5AB2AC2AD1AE1AF1AG1AH1AI1AJ1AK1AL1AM1AN1AO1AP1AQ1AR1AS1AT1AU1AV1AW1AX1AY1AZ1Aa1Ab1Ac1Ad1Ae1Af1Ag1Ah1Ai1Aj1Ak1Al1Am1An1Ao1Ap1Aq1Ar1As1At1Au1Av1Aw1Ax1Ay1Az1BA1BB1BC1BD1BE1BF1BG1BH1BI1BJ1BK1BL1BM1BN1BO1BP1BQ1BR1BS1BT1BU1BV1BW1BX1BY1BZ1Ba1Bb1Bc1Bd1Be1 Local Symmetry: Helical - H  (Explore in 3D)
Local Stoichiometry: Homo 5-mer - AA5 

Local Symmetry: Helical - H  (Explore in 3D)
Local Stoichiometry: Homo 5-mer - AA5 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 3,309.35 kDa 
• Atom Count: 194,797 
• Modelled Residue Count: 18,463 
• Deposited Residue Count: 23,824 
• Unique protein chains: 84
• Unique nucleic acid chains: 7

Macromolecules

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S2, mitochondrial	B [auth AB]	296	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y399 (Homo sapiens) Explore Q9Y399  Go to UniProtKB:  Q9Y399
PHAROS:  Q9Y399 GTEx:  ENSG00000122140

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S24, mitochondrial	C [auth AC]	167	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EL2 (Homo sapiens) Explore Q96EL2  Go to UniProtKB:  Q96EL2
GTEx:  ENSG00000062582

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S5, mitochondrial	D [auth AD]	430	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82675 (Homo sapiens) Explore P82675  Go to UniProtKB:  P82675
PHAROS:  P82675 GTEx:  ENSG00000144029

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S6, mitochondrial	E [auth AE]	125	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82932 (Homo sapiens) Explore P82932  Go to UniProtKB:  P82932
PHAROS:  P82932 GTEx:  ENSG00000243927

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S7, mitochondrial	F [auth AF]	242	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2R9 (Homo sapiens) Explore Q9Y2R9  Go to UniProtKB:  Q9Y2R9
PHAROS:  Q9Y2R9 GTEx:  ENSG00000125445

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S9, mitochondrial	G [auth AG]	396	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82933 (Homo sapiens) Explore P82933  Go to UniProtKB:  P82933
PHAROS:  P82933 GTEx:  ENSG00000135972

Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S10, mitochondrial	H [auth AH]	201	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82664 (Homo sapiens) Explore P82664  Go to UniProtKB:  P82664
PHAROS:  P82664 GTEx:  ENSG00000048544

Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S11, mitochondrial	I [auth AI]	194	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82912 (Homo sapiens) Explore P82912  Go to UniProtKB:  P82912
PHAROS:  P82912 GTEx:  ENSG00000181991

Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S12, mitochondrial	J [auth AJ]	138	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O15235 (Homo sapiens) Explore O15235  Go to UniProtKB:  O15235
PHAROS:  O15235 GTEx:  ENSG00000128626

Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S14, mitochondrial	K [auth AK]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O60783 (Homo sapiens) Explore O60783  Go to UniProtKB:  O60783
PHAROS:  O60783 GTEx:  ENSG00000120333

Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S15, mitochondrial	L [auth AL]	257	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82914 (Homo sapiens) Explore P82914  Go to UniProtKB:  P82914
PHAROS:  P82914 GTEx:  ENSG00000116898

Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S16, mitochondrial	M [auth AM]	137	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3D3 (Homo sapiens) Explore Q9Y3D3  Go to UniProtKB:  Q9Y3D3
PHAROS:  Q9Y3D3 GTEx:  ENSG00000182180

Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S17, mitochondrial	N [auth AN]	130	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2R5 (Homo sapiens) Explore Q9Y2R5  Go to UniProtKB:  Q9Y2R5
PHAROS:  Q9Y2R5 GTEx:  ENSG00000239789

Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S18b, mitochondrial	O [auth AO]	258	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y676 (Homo sapiens) Explore Q9Y676  Go to UniProtKB:  Q9Y676
PHAROS:  Q9Y676 GTEx:  ENSG00000204568

Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S18c, mitochondrial	P [auth AP]	142	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3D5 (Homo sapiens) Explore Q9Y3D5  Go to UniProtKB:  Q9Y3D5
PHAROS:  Q9Y3D5 GTEx:  ENSG00000163319

Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S21, mitochondrial	Q [auth AQ]	87	Homo sapiens	Mutation(s): 1
UniProt & NIH Common Fund Data Resources
Find proteins for P82921 (Homo sapiens) Explore P82921  Go to UniProtKB:  P82921
PHAROS:  P82921 GTEx:  ENSG00000266472

Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S22, mitochondrial	R [auth AR]	360	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82650 (Homo sapiens) Explore P82650  Go to UniProtKB:  P82650
PHAROS:  P82650 GTEx:  ENSG00000175110

Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S23, mitochondrial	S [auth AS]	190	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3D9 (Homo sapiens) Explore Q9Y3D9  Go to UniProtKB:  Q9Y3D9
PHAROS:  Q9Y3D9 GTEx:  ENSG00000181610

Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S25, mitochondrial	T [auth AT]	173	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82663 (Homo sapiens) Explore P82663  Go to UniProtKB:  P82663
PHAROS:  P82663 GTEx:  ENSG00000131368

Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S26, mitochondrial	U [auth AU]	205	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYN8 (Homo sapiens) Explore Q9BYN8  Go to UniProtKB:  Q9BYN8
GTEx:  ENSG00000125901

Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S27, mitochondrial	V [auth AV]	414	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q92552 (Homo sapiens) Explore Q92552  Go to UniProtKB:  Q92552
PHAROS:  Q92552 GTEx:  ENSG00000113048

Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S28, mitochondrial	W [auth AW]	187	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y2Q9 (Homo sapiens) Explore Q9Y2Q9  Go to UniProtKB:  Q9Y2Q9
PHAROS:  Q9Y2Q9 GTEx:  ENSG00000147586

Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S29, mitochondrial	X [auth AX]	398	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P51398 (Homo sapiens) Explore P51398  Go to UniProtKB:  P51398
PHAROS:  P51398 GTEx:  ENSG00000132676

Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S33, mitochondrial	Y [auth AZ]	106	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y291 (Homo sapiens) Explore Q9Y291  Go to UniProtKB:  Q9Y291
PHAROS:  Q9Y291 GTEx:  ENSG00000090263

Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S34, mitochondrial	Z [auth A0]	217	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82930 (Homo sapiens) Explore P82930  Go to UniProtKB:  P82930
PHAROS:  P82930 GTEx:  ENSG00000074071

Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S35, mitochondrial	AA [auth A1]	323	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P82673 (Homo sapiens) Explore P82673  Go to UniProtKB:  P82673
PHAROS:  P82673 GTEx:  ENSG00000061794

Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1	BA [auth A2]	118	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96BP2 (Homo sapiens) Explore Q96BP2  Go to UniProtKB:  Q96BP2
PHAROS:  Q96BP2 GTEx:  ENSG00000172586

Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
Aurora kinase A-interacting protein	CA [auth A3]	199	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWT8 (Homo sapiens) Explore Q9NWT8  Go to UniProtKB:  Q9NWT8
PHAROS:  Q9NWT8 GTEx:  ENSG00000175756

Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L2, mitochondrial	IA [auth D]	305	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T653 (Homo sapiens) Explore Q5T653  Go to UniProtKB:  Q5T653
PHAROS:  Q5T653 GTEx:  ENSG00000112651

Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L3, mitochondrial	JA [auth E]	348	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P09001 (Homo sapiens) Explore P09001  Go to UniProtKB:  P09001
PHAROS:  P09001 GTEx:  ENSG00000114686

Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L4, mitochondrial	KA [auth F]	311	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD3 (Homo sapiens) Explore Q9BYD3  Go to UniProtKB:  Q9BYD3
PHAROS:  Q9BYD3 GTEx:  ENSG00000105364

Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L10, mitochondrial	LA [auth I]	261	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7H8 (Homo sapiens) Explore Q7Z7H8  Go to UniProtKB:  Q7Z7H8
PHAROS:  Q7Z7H8 GTEx:  ENSG00000159111

Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L11, mitochondrial	MA [auth J]	192	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y3B7 (Homo sapiens) Explore Q9Y3B7  Go to UniProtKB:  Q9Y3B7
PHAROS:  Q9Y3B7 GTEx:  ENSG00000174547

Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L13, mitochondrial	NA [auth K]	178	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD1 (Homo sapiens) Explore Q9BYD1  Go to UniProtKB:  Q9BYD1
PHAROS:  Q9BYD1 GTEx:  ENSG00000172172

Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L14, mitochondrial	OA [auth L]	145	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P1L8 (Homo sapiens) Explore Q6P1L8  Go to UniProtKB:  Q6P1L8
PHAROS:  Q6P1L8 GTEx:  ENSG00000180992

Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L15, mitochondrial	PA [auth M]	296	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P015 (Homo sapiens) Explore Q9P015  Go to UniProtKB:  Q9P015
PHAROS:  Q9P015 GTEx:  ENSG00000137547

Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L16, mitochondrial	QA [auth N]	251	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NX20 (Homo sapiens) Explore Q9NX20  Go to UniProtKB:  Q9NX20
PHAROS:  Q9NX20 GTEx:  ENSG00000166902

Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L17, mitochondrial	RA [auth O]	175	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NRX2 (Homo sapiens) Explore Q9NRX2  Go to UniProtKB:  Q9NRX2
PHAROS:  Q9NRX2 GTEx:  ENSG00000158042

Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L18, mitochondrial	SA [auth P]	180	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H0U6 (Homo sapiens) Explore Q9H0U6  Go to UniProtKB:  Q9H0U6
PHAROS:  Q9H0U6 GTEx:  ENSG00000112110

Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L19, mitochondrial	TA [auth Q]	292	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P49406 (Homo sapiens) Explore P49406  Go to UniProtKB:  P49406
PHAROS:  P49406 GTEx:  ENSG00000115364

Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L20, mitochondrial	UA [auth R]	149	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYC9 (Homo sapiens) Explore Q9BYC9  Go to UniProtKB:  Q9BYC9
PHAROS:  Q9BYC9 GTEx:  ENSG00000242485

Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L21, mitochondrial	VA [auth S]	205	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z2W9 (Homo sapiens) Explore Q7Z2W9  Go to UniProtKB:  Q7Z2W9
GTEx:  ENSG00000197345

Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L22, mitochondrial	WA [auth T]	206	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NWU5 (Homo sapiens) Explore Q9NWU5  Go to UniProtKB:  Q9NWU5
PHAROS:  Q9NWU5 GTEx:  ENSG00000082515

Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L23, mitochondrial	XA [auth U]	153	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q16540 (Homo sapiens) Explore Q16540  Go to UniProtKB:  Q16540
PHAROS:  Q16540 GTEx:  ENSG00000214026

Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L24, mitochondrial	YA [auth V]	216	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96A35 (Homo sapiens) Explore Q96A35  Go to UniProtKB:  Q96A35
PHAROS:  Q96A35 GTEx:  ENSG00000143314

Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L27, mitochondrial	ZA [auth W]	148	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0M9 (Homo sapiens) Explore Q9P0M9  Go to UniProtKB:  Q9P0M9
PHAROS:  Q9P0M9 GTEx:  ENSG00000108826

Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L28, mitochondrial	AB [auth X]	256	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q13084 (Homo sapiens) Explore Q13084  Go to UniProtKB:  Q13084
PHAROS:  Q13084 GTEx:  ENSG00000086504

Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L47, mitochondrial	BB [auth Y]	250	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9HD33 (Homo sapiens) Explore Q9HD33  Go to UniProtKB:  Q9HD33
PHAROS:  Q9HD33 GTEx:  ENSG00000136522

Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L30, mitochondrial	CB [auth Z]	161	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TCC3 (Homo sapiens) Explore Q8TCC3  Go to UniProtKB:  Q8TCC3
PHAROS:  Q8TCC3 GTEx:  ENSG00000185414

Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L32, mitochondrial	DB [auth 0]	188	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYC8 (Homo sapiens) Explore Q9BYC8  Go to UniProtKB:  Q9BYC8
PHAROS:  Q9BYC8 GTEx:  ENSG00000106591

Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L33, mitochondrial	EB [auth 1]	65	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O75394 (Homo sapiens) Explore O75394  Go to UniProtKB:  O75394
PHAROS:  O75394 GTEx:  ENSG00000243147

Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L34, mitochondrial	FB [auth 2]	92	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BQ48 (Homo sapiens) Explore Q9BQ48  Go to UniProtKB:  Q9BQ48
PHAROS:  Q9BQ48 GTEx:  ENSG00000130312

Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L35, mitochondrial	GB [auth 3]	188	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NZE8 (Homo sapiens) Explore Q9NZE8  Go to UniProtKB:  Q9NZE8
PHAROS:  Q9NZE8 GTEx:  ENSG00000132313

Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L36, mitochondrial	HB [auth 4]	103	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0J6 (Homo sapiens) Explore Q9P0J6  Go to UniProtKB:  Q9P0J6
PHAROS:  Q9P0J6 GTEx:  ENSG00000171421

Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L37, mitochondrial	IB [auth 5]	423	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BZE1 (Homo sapiens) Explore Q9BZE1  Go to UniProtKB:  Q9BZE1
PHAROS:  Q9BZE1 GTEx:  ENSG00000116221

Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L38, mitochondrial	JB [auth 6]	380	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96DV4 (Homo sapiens) Explore Q96DV4  Go to UniProtKB:  Q96DV4
GTEx:  ENSG00000204316

Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L39, mitochondrial	KB [auth 7]	338	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NYK5 (Homo sapiens) Explore Q9NYK5  Go to UniProtKB:  Q9NYK5
PHAROS:  Q9NYK5 GTEx:  ENSG00000154719

Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L40, mitochondrial	LB [auth 8]	206	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NQ50 (Homo sapiens) Explore Q9NQ50  Go to UniProtKB:  Q9NQ50
PHAROS:  Q9NQ50 GTEx:  ENSG00000185608

Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L41, mitochondrial	MB [auth 9]	137	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IXM3 (Homo sapiens) Explore Q8IXM3  Go to UniProtKB:  Q8IXM3
PHAROS:  Q8IXM3 GTEx:  ENSG00000182154

Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L42, mitochondrial	NB [auth a]	142	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y6G3 (Homo sapiens) Explore Q9Y6G3  Go to UniProtKB:  Q9Y6G3
PHAROS:  Q9Y6G3 GTEx:  ENSG00000198015

Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L43, mitochondrial	OB [auth b]	215	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N983 (Homo sapiens) Explore Q8N983  Go to UniProtKB:  Q8N983
PHAROS:  Q8N983 GTEx:  ENSG00000055950

Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L44, mitochondrial	PB [auth c]	332	Homo sapiens	Mutation(s): 0  EC: 3.1.26
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H9J2 (Homo sapiens) Explore Q9H9J2  Go to UniProtKB:  Q9H9J2
PHAROS:  Q9H9J2 GTEx:  ENSG00000135900

Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L45, mitochondrial	QB [auth d]	306	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BRJ2 (Homo sapiens) Explore Q9BRJ2  Go to UniProtKB:  Q9BRJ2
PHAROS:  Q9BRJ2

Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L46, mitochondrial	RB [auth e]	279	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H2W6 (Homo sapiens) Explore Q9H2W6  Go to UniProtKB:  Q9H2W6
GTEx:  ENSG00000259494

Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L48, mitochondrial	SB [auth f]	212	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96GC5 (Homo sapiens) Explore Q96GC5  Go to UniProtKB:  Q96GC5
PHAROS:  Q96GC5 GTEx:  ENSG00000175581

Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L49, mitochondrial	TB [auth g]	166	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q13405 (Homo sapiens) Explore Q13405  Go to UniProtKB:  Q13405
PHAROS:  Q13405 GTEx:  ENSG00000149792

Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L50, mitochondrial	UB [auth h]	158	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N5N7 (Homo sapiens) Explore Q8N5N7  Go to UniProtKB:  Q8N5N7
PHAROS:  Q8N5N7 GTEx:  ENSG00000136897

Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L51, mitochondrial	VB [auth i]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q4U2R6 (Homo sapiens) Explore Q4U2R6  Go to UniProtKB:  Q4U2R6
PHAROS:  Q4U2R6 GTEx:  ENSG00000111639

Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L52, mitochondrial	WB [auth j]	123	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q86TS9 (Homo sapiens) Explore Q86TS9  Go to UniProtKB:  Q86TS9
PHAROS:  Q86TS9 GTEx:  ENSG00000172590

Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L53, mitochondrial	XB [auth k]	112	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EL3 (Homo sapiens) Explore Q96EL3  Go to UniProtKB:  Q96EL3
GTEx:  ENSG00000204822

Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L54, mitochondrial	YB [auth l]	138	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q6P161 (Homo sapiens) Explore Q6P161  Go to UniProtKB:  Q6P161
PHAROS:  Q6P161 GTEx:  ENSG00000183617

Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L55, mitochondrial	ZB [auth m]	128	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7F7 (Homo sapiens) Explore Q7Z7F7  Go to UniProtKB:  Q7Z7F7
PHAROS:  Q7Z7F7 GTEx:  ENSG00000162910

Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein 63, mitochondrial	AC [auth o]	102	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BQC6 (Homo sapiens) Explore Q9BQC6  Go to UniProtKB:  Q9BQC6
PHAROS:  Q9BQC6 GTEx:  ENSG00000173141

Entity ID: 80
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-tRNA hydrolase ICT1, mitochondrial	BC [auth p]	206	Homo sapiens	Mutation(s): 0  EC: 3.1.1.29
UniProt & NIH Common Fund Data Resources
Find proteins for Q14197 (Homo sapiens) Explore Q14197  Go to UniProtKB:  Q14197
PHAROS:  Q14197 GTEx:  ENSG00000167862

Entity ID: 81
Molecule	Chains	Sequence Length	Organism	Details	Image
Growth arrest and DNA damage-inducible proteins-interacting protein 1	CC [auth q]	222	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TAE8 (Homo sapiens) Explore Q8TAE8  Go to UniProtKB:  Q8TAE8
PHAROS:  Q8TAE8 GTEx:  ENSG00000179271

Entity ID: 82
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein S18a, mitochondrial	DC [auth r]	196	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NVS2 (Homo sapiens) Explore Q9NVS2  Go to UniProtKB:  Q9NVS2
PHAROS:  Q9NVS2 GTEx:  ENSG00000096080

Entity ID: 83
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein S30, mitochondrial	EC [auth s]	439	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NP92 (Homo sapiens) Explore Q9NP92  Go to UniProtKB:  Q9NP92
PHAROS:  Q9NP92 GTEx:  ENSG00000112996

Entity ID: 84
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L12, mitochondrial	FC [auth t], GC [auth u], HC [auth v], IC [auth w], JC [auth x], KC [auth y]	198	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P52815 (Homo sapiens) Explore P52815  Go to UniProtKB:  P52815
PHAROS:  P52815 GTEx:  ENSG00000262814

Entity ID: 85
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L9, mitochondrial	LC [auth H]	267	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD2 (Homo sapiens) Explore Q9BYD2  Go to UniProtKB:  Q9BYD2
PHAROS:  Q9BYD2 GTEx:  ENSG00000143436

Entity ID: 86
Molecule	Chains	Sequence Length	Organism	Details	Image
39S ribosomal protein L1, mitochondrial	MC [auth z]	325	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYD6 (Homo sapiens) Explore Q9BYD6  Go to UniProtKB:  Q9BYD6
PHAROS:  Q9BYD6 GTEx:  ENSG00000169288

Entity ID: 87
Molecule	Chains	Sequence Length	Organism	Details	Image
28S ribosomal protein S31, mitochondrial	NC [auth AY]	395	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q92665 (Homo sapiens) Explore Q92665  Go to UniProtKB:  Q92665
PHAROS:  Q92665 GTEx:  ENSG00000102738

Entity ID: 88
Molecule	Chains	Sequence Length	Organism	Details	Image
Leucine-rich PPR motif-containing protein, mitochondrial	OC [auth A5]	1,394	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P42704 (Homo sapiens) Explore P42704  Go to UniProtKB:  P42704
PHAROS:  P42704 GTEx:  ENSG00000138095

Entity ID: 89
Molecule	Chains	Sequence Length	Organism	Details	Image
Pentatricopeptide repeat domain-containing protein 3, mitochondrial	PC [auth A4]	689	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q96EY7 (Homo sapiens) Explore Q96EY7  Go to UniProtKB:  Q96EY7
PHAROS:  Q96EY7 GTEx:  ENSG00000132300

Entity ID: 90
Molecule	Chains	Sequence Length	Organism	Details	Image
SRA stem-loop-interacting RNA-binding protein, mitochondrial	QC [auth A6]	109	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q9GZT3 (Homo sapiens) Explore Q9GZT3  Go to UniProtKB:  Q9GZT3
PHAROS:  Q9GZT3 GTEx:  ENSG00000119705

Entity ID: 1
Molecule	Chains	Length	Organism	Image
12S mitochondrial rRNA	A [auth AA]	954	Homo sapiens

Entity ID: 30
Molecule	Chains	Length	Organism	Image
A/A-tRNA	DA [auth Aw]	68	Homo sapiens

Entity ID: 31
Molecule	Chains	Length	Organism	Image
P/P-tRNA	EA [auth Ax]	70	Homo sapiens

Entity ID: 32
Molecule	Chains	Length	Organism	Image
E/E-tRNA	FA [auth Ay]	70	Homo sapiens

Entity ID: 33
Molecule	Chains	Length	Organism	Image
16S mitochondrial rRNA	GA [auth A]	1,561	Homo sapiens

Entity ID: 34
Molecule	Chains	Length	Organism	Image
mitochondrial tRNAVal	HA [auth B]	72	Homo sapiens

Entity ID: 91
Molecule	Chains	Length	Organism	Image
mRNA	RC [auth Az]	42	Homo sapiens

Small Molecules

Ligands 11 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAD	SC [auth AA]	NICOTINAMIDE-ADENINE-DINUCLEOTIDE C21 H27 N7 O14 P2 BAWFJGJZGIEFAR-NNYOXOHSSA-N
ATP	ZF [auth AX]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N
GDP	BG [auth AX]	GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N
SPM	TC [auth AA]	SPERMINE C10 H26 N4 PFNFFQXMRSDOHW-UHFFFAOYSA-N
FES	CN [auth r], XF [auth AP], YF [auth AT]	FE2/S2 (INORGANIC) CLUSTER Fe2 S2 NIXDOXVAJZFRNF-UHFFFAOYSA-N
SPD	EG [auth A], FG [auth A], GG [auth A], UC [auth AA]	SPERMIDINE C7 H19 N3 ATHGHQPFGPMSJY-UHFFFAOYSA-N
VAL	QM [auth B]	VALINE C5 H11 N O2 KZSNJWFQEVHDMF-BYPYZUCNSA-N
PUT	HG [auth A]	1,4-DIAMINOBUTANE C4 H12 N2 KIDHWZJUCRJVML-UHFFFAOYSA-N
ZN	WF [auth AO], XM [auth 0], YM [auth 4]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
K	AM [auth A], AN [auth i], BM [auth A], BN [auth o], CM [auth A], DM [auth A], EM [auth A], FF [auth AA], FM [auth A], GF [auth AA], GM [auth A], HF [auth AA], HM [auth A], IF [auth AA], IG [auth A], IM [auth A], JF [auth AA], JM [auth A], KF [auth AA], KM [auth A], LF [auth AA], LM [auth A], MF [auth AA], MM [auth A], NF [auth AA], NM [auth A], OF [auth AA], OM [auth A], PF [auth AA], PL [auth A], PM [auth A], QF [auth AA], QL [auth A], RF [auth AA], RL [auth A], SF [auth AA], SL [auth A], TF [auth AA], TL [auth A], TM [auth D], UF [auth AA], UL [auth A], VL [auth A], VM [auth M], WL [auth A], WM [auth P], XL [auth A], YL [auth A], ZL [auth A]	POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG	AD [auth AA], AE [auth AA], AF [auth AA], AG [auth AX], AH [auth A], AI [auth A], AJ [auth A], AK [auth A], AL [auth A], BD [auth AA], BE [auth AA], BF [auth AA], BH [auth A], BI [auth A], BJ [auth A], BK [auth A], BL [auth A], CD [auth AA], CE [auth AA], CF [auth AA], CG [auth A3], CH [auth A], CI [auth A], CJ [auth A], CK [auth A], CL [auth A], DD [auth AA], DE [auth AA], DF [auth AA], DG [auth Aw], DH [auth A], DI [auth A], DJ [auth A], DK [auth A], DL [auth A], ED [auth AA], EE [auth AA], EF [auth AA], EH [auth A], EI [auth A], EJ [auth A], EK [auth A], EL [auth A], FD [auth AA], FE [auth AA], FH [auth A], FI [auth A], FJ [auth A], FK [auth A], FL [auth A], GD [auth AA], GE [auth AA], GH [auth A], GI [auth A], GJ [auth A], GK [auth A], GL [auth A], HD [auth AA], HE [auth AA], HH [auth A], HI [auth A], HJ [auth A], HK [auth A], HL [auth A], ID [auth AA], IE [auth AA], IH [auth A], II [auth A], IJ [auth A], IK [auth A], IL [auth A], JD [auth AA], JE [auth AA], JG [auth A], JH [auth A], JI [auth A], JJ [auth A], JK [auth A], JL [auth A], KD [auth AA], KE [auth AA], KG [auth A], KH [auth A], KI [auth A], KJ [auth A], KK [auth A], KL [auth A], LD [auth AA], LE [auth AA], LG [auth A], LH [auth A], LI [auth A], LJ [auth A], LK [auth A], LL [auth A], MD [auth AA], ME [auth AA], MG [auth A], MH [auth A], MI [auth A], MJ [auth A], MK [auth A], ML [auth A], ND [auth AA], NE [auth AA], NG [auth A], NH [auth A], NI [auth A], NJ [auth A], NK [auth A], NL [auth A], OD [auth AA], OE [auth AA], OG [auth A], OH [auth A], OI [auth A], OJ [auth A], OK [auth A], OL [auth A], PD [auth AA], PE [auth AA], PG [auth A], PH [auth A], PI [auth A], PJ [auth A], PK [auth A], QD [auth AA], QE [auth AA], QG [auth A], QH [auth A], QI [auth A], QJ [auth A], QK [auth A], RD [auth AA], RE [auth AA], RG [auth A], RH [auth A], RI [auth A], RJ [auth A], RK [auth A], RM [auth D], SD [auth AA], SE [auth AA], SG [auth A], SH [auth A], SI [auth A], SJ [auth A], SK [auth A], SM [auth D], TD [auth AA], TE [auth AA], TG [auth A], TH [auth A], TI [auth A], TJ [auth A], TK [auth A], UD [auth AA], UE [auth AA], UG [auth A], UH [auth A], UI [auth A], UJ [auth A], UK [auth A], UM [auth E], VC [auth AA], VD [auth AA], VE [auth AA], VF [auth AB], VG [auth A], VH [auth A], VI [auth A], VJ [auth A], VK [auth A], WC [auth AA], WD [auth AA], WE [auth AA], WG [auth A], WH [auth A], WI [auth A], WJ [auth A], WK [auth A], XC [auth AA], XD [auth AA], XE [auth AA], XG [auth A], XH [auth A], XI [auth A], XJ [auth A], XK [auth A], YC [auth AA], YD [auth AA], YE [auth AA], YG [auth A], YH [auth A], YI [auth A], YJ [auth A], YK [auth A], ZC [auth AA], ZD [auth AA], ZE [auth AA], ZG [auth A], ZH [auth A], ZI [auth A], ZJ [auth A], ZK [auth A], ZM [auth g]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
AYA	Q [auth AQ]	L-PEPTIDE LINKING	C5 H9 N O3		ALA
SAC	NA [auth K]	L-PEPTIDE LINKING	C5 H9 N O4		SER
THC	OB [auth b]	L-PEPTIDE LINKING	C6 H11 N O4		THR

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.85 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-08-16 
Deposition Author(s): Singh, V., Itoh, Y., Amunts, A.

---

Funding Organization	Location	Grant Number
Swedish Research Council	Sweden	--
Knut and Alice Wallenberg Foundation	Sweden	--
European Research Council (ERC)	European Union	--
European Molecular Biology Organization (EMBO)	European Union	--
H2020 Marie Curie Actions of the European Commission	European Union	--

Revision History  

• Version 1.0: 2023-08-16
  Type: Initial release
  
• Version 2.0: 2023-11-15
  Changes: Atomic model, Data collection, Derived calculations
• Version 2.1: 2024-01-17
  Changes: Structure summary
• Version 2.2: 2024-04-24
  Changes: Data collection