Decrypting the programming of beta-methylation in virginiamycin M biosynthesis
Collin, S., Gruez, A.(2023) Nat Commun 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2023) Nat Commun 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Enoyl-CoA hydratase | A, B, C | 250 | Streptomyces virginiae | Mutation(s): 0  Gene Names: virD | ![]() |
UniProt | |||||
Find proteins for A4PHM7 (Streptomyces virginiae) Explore A4PHM7  Go to UniProtKB:  A4PHM7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A4PHM7 | ||||
Protein Feature ViewExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IMD Query on IMD | S [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O | Ligand Interaction | ||
EDO Query on EDO | AA [auth B], BA [auth B], CA [auth B], D [auth A], DA [auth B], | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | Ligand Interaction | ||
CL (Subject of Investigation/LOI) Query on CL | FA [auth B], QA [auth C], T [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | Ligand Interaction |
Modified Residues  1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 84.31 | α = 90 |
b = 84.31 | β = 90 |
c = 230.19 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
Aimless | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
PHENIX | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Agence Nationale de la Recherche (ANR) | France | ANR-11-JSV8-003-01 |
Agence Nationale de la Recherche (ANR) | France | ANR-16-CE92-0006-01 |
Agence Nationale de la Recherche (ANR) | France | ANR-20-CE93-0002-01 |