8AAM | pdb_00008aam

Crystal structure of MreB from Geobacillus stearothermophilus ATCC7953

PDB DOI: https://doi.org/10.2210/pdb8AAM/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Geobacillus stearothermophilus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-07-01 Released: 2023-07-12
Deposition Author(s): Li de la Sierra-Gallay, I.
Funding Organization(s): French Infrastructure for Integrated Structural Biology (FRISBI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å
R-Value Free:
0.274 (Depositor), 0.273 (DCC)
R-Value Work:
0.202 (Depositor), 0.203 (DCC)
R-Value Observed:
0.206 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Polymerization cycle of an actin homolog MreB from a Gram-positive bacterium

Mao, W., Conilleau, C., Li de la Sierra-Gallay, I., Ah-Seng, Y., van Tilbeurgh, H., Renner, L., Nessler, S., Bertin, A., Chastanet, A., Carballido-Lopes, R.

To be published.

Macromolecule Content

Total Structure Weight: 36.87 kDa
Atom Count: 2,421
Modeled Residue Count: 319
Deposited Residue Count: 340
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Cell shape-determining protein MreB	A [auth M]	340	Geobacillus stearothermophilus	Mutation(s): 0 Gene Names: mreB, B4109_2230, B4114_2117, GS458_2390
UniProt
Find proteins for A0A150MJ77 (Geobacillus stearothermophilus) Explore A0A150MJ77 Go to UniProtKB: A0A150MJ77
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A150MJ77
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download:Ideal Coordinates CCD File SDF format, chain B [auth M] MOL2 format, chain B [auth M] mmCIF format, chain B [auth M]	B [auth M]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain B [auth M] Interactions & Density Focus chain B [auth M]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.29 Å
R-Value Free: 0.274 (Depositor), 0.273 (DCC)
R-Value Work: 0.202 (Depositor), 0.203 (DCC)
R-Value Observed: 0.206 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.67	α = 90
b = 61.71	β = 112.17
c = 51.01	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
MOLREP	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-07-12

Deposition Author(s):

Li de la Sierra-Gallay, I.

Funding Organization	Location	Grant Number
French Infrastructure for Integrated Structural Biology (FRISBI)	France	ANR-10-INBS-05

Revision History (Full details and data files)

Version 1.0: 2023-07-12
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.