8A3T

S. cerevisiae APC/C-Cdh1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex

Barford, D.Vazquez-Fernandez, E.Zhang, Z.Yang, J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit CDC27A [auth F],
F [auth H]
758Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CDC27APC3SNB1YBL084CYBL0718
UniProt
Find proteins for P38042 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P38042 
Go to UniProtKB:  P38042
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP38042
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit CDC16B [auth J],
C [auth K]
850Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CDC16YKL022C
UniProt
Find proteins for P09798 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P09798 
Go to UniProtKB:  P09798
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP09798
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit CDC26D [auth G],
E [auth W]
124Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CDC26HIT3SCD26YFR036W
UniProt
Find proteins for P14724 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P14724 
Go to UniProtKB:  P14724
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP14724
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 9G [auth E]265Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: APC9YLR102C
UniProt
Find proteins for Q12107 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12107 
Go to UniProtKB:  Q12107
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12107
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit DOC1H [auth A]250Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: DOC1APC10YGL240WHRC283
UniProt
Find proteins for P53068 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53068 
Go to UniProtKB:  P53068
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53068
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
CDH1 isoform 1I [auth B]566Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CDH1GI527_G0002420
UniProt
Find proteins for P53197 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53197 
Go to UniProtKB:  P53197
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53197
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
HSL1 isoform 1J [auth S]1,518Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: HSL1GI527_G0003535
EC: 2.7.11.1
UniProt
Find proteins for P34244 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P34244 
Go to UniProtKB:  P34244
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP34244
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 1K [auth C]1,748Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: APC1YNL172WN1677
UniProt
Find proteins for P53886 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53886 
Go to UniProtKB:  P53886
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53886
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 5L [auth O]685Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: APC5RMC1YOR249C
UniProt
Find proteins for Q08683 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q08683 
Go to UniProtKB:  Q08683
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ08683
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit CDC23M [auth D],
N [auth P]
626Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: CDC23YHR166C
UniProt
Find proteins for P16522 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P16522 
Go to UniProtKB:  P16522
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16522
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit SWM1O [auth I]170Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: SWM1APC13YDR260CYD9320A.11YD9320A.11c
UniProt
Find proteins for Q12379 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12379 
Go to UniProtKB:  Q12379
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12379
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit MND2P [auth N]368Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: MND2YIR025W
UniProt
Find proteins for P40577 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40577 
Go to UniProtKB:  P40577
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40577
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 4652Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: APC4YDR118W
UniProt
Find proteins for Q04601 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04601 
Go to UniProtKB:  Q04601
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ04601
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 2R [auth T]853Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: APC2RSI1YLR127CL3105L3108
UniProt
Find proteins for Q12440 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12440 
Go to UniProtKB:  Q12440
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12440
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 11S [auth U]165Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: APC11YDL008WD2900
EC: 6.3.2
UniProt
Find proteins for Q12157 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q12157 
Go to UniProtKB:  Q12157
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12157
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.50 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMC_UP_1201/6
Cancer Research UKUnited KingdomC576/A14109

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-31
    Type: Initial release
  • Version 1.1: 2024-11-06
    Changes: Data collection, Structure summary