Cryo-EM structure of the S. cerevisiae APC/C-Cdh1 complex
Barford, D., Vazquez-Fernandez, E., Zhang, Z., Yang, J.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit CDC27 | A [auth F], F [auth H] | 758 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CDC27, APC3, SNB1, YBL084C, YBL0718 | |
UniProt | |||||
Find proteins for P38042 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P38042  Go to UniProtKB:  P38042 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P38042 | ||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit CDC16 | B [auth J], C [auth K] | 850 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CDC16, YKL022C | |
UniProt | |||||
Find proteins for P09798 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P09798  Go to UniProtKB:  P09798 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P09798 | ||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit CDC26 | D [auth G], E [auth W] | 124 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CDC26, HIT3, SCD26, YFR036W | |
UniProt | |||||
Find proteins for P14724 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P14724  Go to UniProtKB:  P14724 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P14724 | ||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit 9 | G [auth E] | 265 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: APC9, YLR102C | |
UniProt | |||||
Find proteins for Q12107 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12107  Go to UniProtKB:  Q12107 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q12107 | ||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit DOC1 | H [auth A] | 250 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: DOC1, APC10, YGL240W, HRC283 | |
UniProt | |||||
Find proteins for P53068 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53068  Go to UniProtKB:  P53068 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P53068 | ||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
CDH1 isoform 1 | I [auth B] | 566 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CDH1, GI527_G0002420 | |
UniProt | |||||
Find proteins for P53197 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53197  Go to UniProtKB:  P53197 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P53197 | ||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
HSL1 isoform 1 | J [auth S] | 1,518 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: HSL1, GI527_G0003535 EC: 2.7.11.1 | |
UniProt | |||||
Find proteins for P34244 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P34244  Go to UniProtKB:  P34244 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P34244 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit 1 | K [auth C] | 1,748 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: APC1, YNL172W, N1677 | |
UniProt | |||||
Find proteins for P53886 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P53886  Go to UniProtKB:  P53886 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P53886 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit 5 | L [auth O] | 685 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: APC5, RMC1, YOR249C | |
UniProt | |||||
Find proteins for Q08683 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q08683  Go to UniProtKB:  Q08683 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q08683 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 10 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit CDC23 | M [auth D], N [auth P] | 626 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: CDC23, YHR166C | |
UniProt | |||||
Find proteins for P16522 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P16522  Go to UniProtKB:  P16522 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16522 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 11 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit SWM1 | O [auth I] | 170 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: SWM1, APC13, YDR260C, YD9320A.11, YD9320A.11c | |
UniProt | |||||
Find proteins for Q12379 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12379  Go to UniProtKB:  Q12379 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q12379 | ||||
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Entity ID: 12 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit MND2 | P [auth N] | 368 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: MND2, YIR025W | |
UniProt | |||||
Find proteins for P40577 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P40577  Go to UniProtKB:  P40577 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40577 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 13 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit 4 | 652 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: APC4, YDR118W | ||
UniProt | |||||
Find proteins for Q04601 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q04601  Go to UniProtKB:  Q04601 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q04601 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 14 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit 2 | R [auth T] | 853 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: APC2, RSI1, YLR127C, L3105, L3108 | |
UniProt | |||||
Find proteins for Q12440 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12440  Go to UniProtKB:  Q12440 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q12440 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 15 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Anaphase-promoting complex subunit 11 | S [auth U] | 165 | Saccharomyces cerevisiae | Mutation(s): 0  Gene Names: APC11, YDL008W, D2900 EC: 6.3.2 | |
UniProt | |||||
Find proteins for Q12157 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore Q12157  Go to UniProtKB:  Q12157 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q12157 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN (Subject of Investigation/LOI) Query on ZN | T [auth U], U, V [auth U] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | |
RECONSTRUCTION | RELION |
Funding Organization | Location | Grant Number |
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Medical Research Council (MRC, United Kingdom) | United Kingdom | MC_UP_1201/6 |
Cancer Research UK | United Kingdom | C576/A14109 |