Fuzzy DNA recognition by a prokaryotic transcription factor
Hadzi, S., Loris, R.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Antitoxin HigA-2 | 103 | Vibrio cholerae | Mutation(s): 0  Gene Names: higA-2, VC_A0469 | ![]() | |
UniProt | |||||
Find proteins for Q9KMA5 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KMA5  Go to UniProtKB:  Q9KMA5 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KMA5 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Toxin HigB-2 | 113 | Vibrio cholerae | Mutation(s): 0  Gene Names: higB-2, VC_A0468 | ![]() | |
UniProt | |||||
Find proteins for Q9KMA6 (Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)) Explore Q9KMA6  Go to UniProtKB:  Q9KMA6 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9KMA6 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (30-MER) | 31 | Vibrio cholerae | ![]() | ||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA (31-MER) | 31 | Vibrio cholerae | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | G [auth A] H [auth A] I [auth A] J [auth B] K [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 113.62 | α = 90 |
b = 113.62 | β = 90 |
c = 121.05 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Slovenian Research Agency | Slovenia | P1-0201 |
Research Foundation - Flanders (FWO) | Belgium | G003320N |