8A0U

Crystal structure of TEAD3 in complex with CPD4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.214 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

The First Class of Small Molecules Potently Disrupting the YAP-TEAD Interaction by Direct Competition.

Furet, P.Bordas, V.Le Douget, M.Salem, B.Mesrouze, Y.Imbach-Weese, P.Sellner, H.Voegtle, M.Soldermann, N.Chapeau, E.Wartmann, M.Scheufler, C.Fernandez, C.Kallen, J.Guagnano, V.Chene, P.Schmelzle, T.

(2022) ChemMedChem 17: e202200303-e202200303

  • DOI: https://doi.org/10.1002/cmdc.202200303
  • Primary Citation of Related Structures:  
    8A0U, 8A0V

  • PubMed Abstract: 

    Inhibition of the YAP-TEAD protein-protein interaction is an attractive therapeutic concept under intense investigation with the objective to treat cancers associated with a dysregulation of the Hippo pathway. However, owing to the very extended surface of interaction of the two proteins, the identification of small drug-like molecules able to efficiently prevent YAP from binding to TEAD by direct competition has been elusive so far. We disclose here the discovery of the first class of small molecules potently inhibiting the YAP-TEAD interaction by binding at one of the main interaction sites of YAP at the surface of TEAD. These inhibitors, providing a path forward to pharmacological intervention in the Hippo pathway, evolved from a weakly active virtual screening hit advanced to high potency by structure-based design.


  • Organizational Affiliation

    Global Discovery Chemistry, Novartis Institutes for BioMedical Research, Basel, 4002, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional enhancer factor TEF-5
A, B, C, D
222Homo sapiensMutation(s): 0 
Gene Names: Tead3Tcf13r2Tef5
UniProt & NIH Common Fund Data Resources
Find proteins for Q99594 (Homo sapiens)
Explore Q99594 
Go to UniProtKB:  Q99594
PHAROS:  Q99594
GTEx:  ENSG00000007866 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99594
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
KMU (Subject of Investigation/LOI)
Query on KMU

Download Ideal Coordinates CCD File 
F [auth A],
K [auth B],
M [auth C],
R [auth D]
2-[(2~{S})-2-(aminomethyl)-5-chloranyl-2-phenyl-3~{H}-1-benzofuran-4-yl]benzamide
C22 H19 Cl N2 O2
CBDKNPCPJRZPOB-JOCHJYFZSA-N
MYR
Query on MYR

Download Ideal Coordinates CCD File 
E [auth A],
J [auth B],
L [auth C],
Q [auth D]
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
PO4
Query on PO4

Download Ideal Coordinates CCD File 
G [auth A]
H [auth A]
I [auth A]
N [auth C]
O [auth C]
G [auth A],
H [auth A],
I [auth A],
N [auth C],
O [auth C],
P [auth C],
S [auth D],
T [auth D]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.268 
  • R-Value Work: 0.212 
  • R-Value Observed: 0.214 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 65.265α = 90
b = 128.607β = 90
c = 156.107γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
autoPROCdata reduction
STARANISOdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-08-17
    Type: Initial release
  • Version 1.1: 2022-08-24
    Changes: Database references
  • Version 1.2: 2022-09-14
    Changes: Database references
  • Version 1.3: 2022-10-19
    Changes: Database references
  • Version 1.4: 2024-05-01
    Changes: Data collection, Refinement description