7ZU0

HOPS tethering complex from yeast


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the HOPS tethering complex, a lysosomal membrane fusion machinery.

Shvarev, D.Schoppe, J.Konig, C.Perz, A.Fullbrunn, N.Kiontke, S.Langemeyer, L.Januliene, D.Schnelle, K.Kummel, D.Frohlich, F.Moeller, A.Ungermann, C.

(2022) Elife 11

  • DOI: https://doi.org/10.7554/eLife.80901
  • Primary Citation of Related Structures:  
    7ZTY, 7ZU0

  • PubMed Abstract: 

    Lysosomes are essential for cellular recycling, nutrient signaling, autophagy, and pathogenic bacteria and viruses invasion. Lysosomal fusion is fundamental to cell survival and requires HOPS, a conserved heterohexameric tethering complex. On the membranes to be fused, HOPS binds small membrane-associated GTPases and assembles SNAREs for fusion, but how the complex fulfills its function remained speculative. Here, we used cryo-electron microscopy to reveal the structure of HOPS. Unlike previously reported, significant flexibility of HOPS is confined to its extremities, where GTPase binding occurs. The SNARE-binding module is firmly attached to the core, therefore, ideally positioned between the membranes to catalyze fusion. Our data suggest a model for how HOPS fulfills its dual functionality of tethering and fusion and indicate why it is an essential part of the membrane fusion machinery.


  • Organizational Affiliation

    Department of Biology/Chemistry, Structural Biology section, Osnabrück University, Osnabrück, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
E3 ubiquitin-protein ligase PEP51,029Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PEP5END1VAM1VPL9VPS11VPT11YMR231WYM9959.13
EC: 2.3.2.27
UniProt
Find proteins for P12868 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP12868
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 16798Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS16VAM9VPT16YPL045W
UniProt
Find proteins for Q03308 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ03308
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar membrane protein PEP3918Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: PEP3VAM8VPS18VPT18YLR148WL9634.2
UniProt
Find proteins for P27801 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP27801
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 33691Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS33SLP1VAM5YLR396CL8084.15
UniProt
Find proteins for P20795 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupP20795
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar morphogenesis protein 61,049Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VAM6CVT4VPL18VPL22VPS39YDL077C
UniProt
Find proteins for Q07468 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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UniProt GroupQ07468
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Vacuolar protein sorting-associated protein 411,016Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: VPS41FET2VAM2YDR080WD446YD8554.13
UniProt
Find proteins for P38959 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanySFB 944
German Research Foundation (DFG)GermanyINST190/196-1 FUGG
German Federal Ministry for Education and ResearchGermanyDLR 01ED2010

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-28
    Type: Initial release
  • Version 1.1: 2022-10-05
    Changes: Database references, Source and taxonomy, Structure summary
  • Version 1.2: 2022-10-12
    Changes: Database references