7ZU0 | pdb_00007zu0

HOPS tethering complex from yeast


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00995Sec1 family (Sec1)Sec1 family- Family
PF26148VPS18 RING C-terminal domain (VPS18_RING_C)VPS18 RING C-terminal domainThis entry represents the RING C-terminal domain in VPS18 proteins. VPS18 proteins are involved in vesicle-mediated protein trafficking to lysosomal compartments, playing a crucial role in endocytic membrane transport and autophagic pathways. They ac ...This entry represents the RING C-terminal domain in VPS18 proteins. VPS18 proteins are involved in vesicle-mediated protein trafficking to lysosomal compartments, playing a crucial role in endocytic membrane transport and autophagic pathways. They act as a core component of the HOPS and CORVET endosomal tethering complexes, facilitating the conversion of Rab5 to Rab7 endosomes and mediating tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is recruited to Rab7 on the late endosomal membrane, regulating late endocytic, phagocytic, and autophagic traffic towards lysosomes. The CORVET complex functions as a Rab5 effector, mediating early endosome fusion. These proteins are essential for processes such as vacuolar biogenesis, lysosome biogenesis, and the degradation of apoptotic cells. They also play roles in embryogenesis, root development, and dendrite development in various organisms [5-6]. This domain is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [11].
Domain
PF04840Vps16, C-terminal region (Vps16_C)Vps16, C-terminal region- Repeat
PF04841Vps16, N-terminal region (Vps16_N)Vps16, N-terminal region- Repeat
PF23356PEP5/VPS11 Clathrin repeat (TPR_PEP5_VPS11)PEP5/VPS11 Clathrin repeat- Repeat
PF12451Vacuolar protein sorting protein 11 C terminal (VPS11_C)Vacuolar protein sorting protein 11 C terminal- Family
PF23341PEP5/VPS11 N-terminal (PEP5_VPS11_N)PEP5/VPS11 N-terminal- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Vacuolar protein sorting-associated protein 41
Vacuolar morphogenesis protein 6
Vacuolar protein sorting-associated protein 33
Vacuolar membrane protein PEP3
Vacuolar protein sorting-associated protein 16
E3 ubiquitin-protein ligase PEP5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR016902Vacuolar protein sorting-associated protein 41Family
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatRepeat
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR045111Vacuolar protein sorting-associated protein Vps41/Vps8Family
IPR001680WD40 repeatRepeat
IPR057780Vps41, beta-propellerDomain
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatRepeat
IPR019452Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1Domain
IPR032914Vam6/VPS39/TRAP1 familyFamily
IPR036045Sec1-like superfamilyHomologous Superfamily
IPR027482Sec1-like, domain 2Homologous Superfamily
IPR043155Vacuolar protein sorting-associated protein 33, domain 3bHomologous Superfamily
IPR043127Sec1-like, domain 3aHomologous Superfamily
IPR001619Sec1-like proteinFamily
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatRepeat
IPR007810Pep3/Vps18, beta-propeller domainDomain
IPR058919Pep3/Vps18, RING C-terminal domainDomain
IPR016534Vacuolar protein sorting-associated protein 16Family
IPR006925Vps16, C-terminalDomain
IPR038132Vps16, C-terminal domain superfamilyHomologous Superfamily
IPR006926Vps16, N-terminalDomain
IPR057307PEP5/VPS11 N-terminalDomain
IPR001965Zinc finger, PHD-typeDomain
IPR057308PEP5/VPS11, clathrin heavy-chain repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatRepeat
IPR024763Vacuolar protein sorting protein 11, C-terminalDomain
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR016528Vacuolar protein sorting-associated protein 11Family
IPR001841Zinc finger, RING-typeDomain