7ZJD

Transient receptor potential cation channel subfamily V member 2,Enhanced green fluorescent protein


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cannabinoid non-cannabidiol site modulation of TRPV2 structure and function.

Zhang, L.Simonsen, C.Zimova, L.Wang, K.Moparthi, L.Gaudet, R.Ekoff, M.Nilsson, G.Hellmich, U.A.Vlachova, V.Gourdon, P.Zygmunt, P.M.

(2022) Nat Commun 13: 7483-7483

  • DOI: https://doi.org/10.1038/s41467-022-35163-y
  • Primary Citation of Related Structures:  
    7ZJD, 7ZJE, 7ZJG, 7ZJH, 7ZJI

  • PubMed Abstract: 

    TRPV2 is a ligand-operated temperature sensor with poorly defined pharmacology. Here, we combine calcium imaging and patch-clamp electrophysiology with cryo-electron microscopy (cryo-EM) to explore how TRPV2 activity is modulated by the phytocannabinoid Δ 9 -tetrahydrocannabiorcol (C16) and by probenecid. C16 and probenecid act in concert to stimulate TRPV2 responses including histamine release from rat and human mast cells. Each ligand causes distinct conformational changes in TRPV2 as revealed by cryo-EM. Although the binding for probenecid remains elusive, C16 associates within the vanilloid pocket. As such, the C16 binding location is distinct from that of cannabidiol, partially overlapping with the binding site of the TRPV2 inhibitor piperlongumine. Taken together, we discover a new cannabinoid binding site in TRPV2 that is under the influence of allosteric control by probenecid. This molecular insight into ligand modulation enhances our understanding of TRPV2 in normal and pathophysiology.


  • Organizational Affiliation

    Department of Clinical Sciences Malmö, Lund University, Malmö, Sweden.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transient receptor potential cation channel subfamily V member 2,Enhanced green fluorescent proteinA,
B [auth C],
C [auth B],
D
1,026Rattus norvegicusMuromegalovirus G4
This entity is chimeric
Mutation(s): 0 
Gene Names: Trpv2eGFP
Membrane Entity: Yes 
UniProt
Find proteins for Q9WUD2 (Rattus norvegicus)
Explore Q9WUD2 
Go to UniProtKB:  Q9WUD2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9WUD2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.94 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2023-01-18
    Type: Initial release