The essential role of a structured water in base recognition of Class II aminoacyl-tRNA synthetases
Pang, L., De Graef, S., Zhang, B., Strelkov, S.V., Van Aerschot, A., Weeks, S.D.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Leucine--tRNA ligase | 877 | Neisseria gonorrhoeae NCCP11945 | Mutation(s): 1  Gene Names: leuS, NGK_0009 EC: 6.1.1.4 | ||
UniProt | |||||
Find proteins for B4RNT1 (Neisseria gonorrhoeae (strain NCCP11945)) Explore B4RNT1  Go to UniProtKB:  B4RNT1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B4RNT1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
JIE (Subject of Investigation/LOI) Query on JIE | C [auth A] | [(2R,3S,4R,5R)-5-(4-azanylimidazo[4,5-c]pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(2S)-2-azanyl-4-methyl-pentanoyl]sulfamate C17 H26 N6 O7 S SLTGASQMUPNMPQ-JHTGIODLSA-N | |||
ZN Query on ZN | D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | B [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | E [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 48.794 | α = 90 |
b = 82.979 | β = 90 |
c = 229.25 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
Aimless | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
PHASER | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Research Foundation - Flanders (FWO) | Belgium | G077814N |
Research Foundation - Flanders (FWO) | Belgium | G0A4616N |
Research Foundation - Flanders (FWO) | Belgium | 1S53516N |