The cryo-EM structure of the CENP-A nucleosome in complex with ggKNL2.
Jiang, H., Ariyoshi, M., Watanabe, R., Makino, F., Namba, K., Fukagawa, T.(2022) Biorxiv 
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
(2022) Biorxiv 
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H3.1,Histone H3-like centromeric protein A | 144 | Gallus gallus | Mutation(s): 0  Gene Names: H3C1, CENPA | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q6XXM1 (Gallus gallus) Explore Q6XXM1  Go to UniProtKB:  Q6XXM1 | |||||
Find proteins for P68431 (Homo sapiens) Explore P68431  Go to UniProtKB:  P68431 | |||||
PHAROS:  P68431 GTEx:  ENSG00000197409  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Groups | P68431Q6XXM1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H4 | 106 | Homo sapiens | Mutation(s): 0  Gene Names: H4C1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62805 (Homo sapiens) Explore P62805  Go to UniProtKB:  P62805 | |||||
PHAROS:  P62805 GTEx:  ENSG00000274618  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62805 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2A type 1-B/E | 130 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04908 (Homo sapiens) Explore P04908  Go to UniProtKB:  P04908 | |||||
PHAROS:  P04908 GTEx:  ENSG00000277075  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04908 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2B type 1-J | 129 | Homo sapiens | Mutation(s): 0  Gene Names: HIST1H2BJ | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06899 (Homo sapiens) Explore P06899  Go to UniProtKB:  P06899 | |||||
PHAROS:  P06899 GTEx:  ENSG00000124635  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06899 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Myb-like domain-containing protein | 44 | Gallus gallus | Mutation(s): 0  | ||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
Chains: I | 143 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | Organism | Image | |
Chains: J | 143 | synthetic construct | |||
Sequence AnnotationsExpand | |||||
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Task | Software Package | Version |
---|---|---|
RECONSTRUCTION | RELION | 3.1 |
MODEL REFINEMENT | PHENIX | 1.20.1 |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Society for the Promotion of Science (JSPS) | Japan | 22H00408 |
Japan Society for the Promotion of Science (JSPS) | Japan | 21K06048 |
Japan Agency for Medical Research and Development (AMED) | Japan | JP19am0101117 |
Japan Agency for Medical Research and Development (AMED) | Japan | JP17pc0101020 |
Japan Science and Technology | Japan | JPMJCR21E6 |
Japan Society for the Promotion of Science (JSPS) | Japan | 22H04692 |
Japan Society for the Promotion of Science (JSPS) | Japan | 21H05752 |