7Y7I

chicken KNL2 in complex with the CENP-A nucleosome


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.42 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The cryo-EM structure of the CENP-A nucleosome in complex with ggKNL2.

Jiang, H.Ariyoshi, M.Watanabe, R.Makino, F.Namba, K.Fukagawa, T.

(2022) Biorxiv 


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H3.1,Histone H3-like centromeric protein A
A, E
144Gallus gallusMutation(s): 0 
Gene Names: H3C1CENPA
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Find proteins for P68431 (Homo sapiens)
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UniProt GroupsP68431Q6XXM1
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H4
B, F
106Homo sapiensMutation(s): 0 
Gene Names: H4C1
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UniProt GroupP62805
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2A type 1-B/E
C, G
130Homo sapiensMutation(s): 0 
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UniProt GroupP04908
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Histone H2B type 1-J
D, H
129Homo sapiensMutation(s): 0 
Gene Names: HIST1H2BJ
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PHAROS:  P06899
GTEx:  ENSG00000124635 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Myb-like domain-containing protein
K, L
44Gallus gallusMutation(s): 0 
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Entity ID: 5
MoleculeChains LengthOrganismImage
Chains: I143synthetic construct
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Entity ID: 6
MoleculeChains LengthOrganismImage
Chains: J143synthetic construct
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.42 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTPHENIX1.20.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan22H00408
Japan Society for the Promotion of Science (JSPS)Japan21K06048
Japan Agency for Medical Research and Development (AMED)JapanJP19am0101117
Japan Agency for Medical Research and Development (AMED)JapanJP17pc0101020
Japan Science and TechnologyJapanJPMJCR21E6
Japan Society for the Promotion of Science (JSPS)Japan22H04692
Japan Society for the Promotion of Science (JSPS)Japan21H05752

Revision History  (Full details and data files)

  • Version 1.0: 2022-07-13
    Type: Initial release