7XKJ

Kras-G12D-GDP-MRTX1133 by FIB-MicroED


Experimental Data Snapshot

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 3.00 Å
  • R-Value Free: 0.337 
  • R-Value Work: 0.310 
  • R-Value Observed: 0.313 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Kras-G12D-GDP-MRTX1133 by FIB-MicroED

Li, X.M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
KRAS proto-oncogene, GTPase169Homo sapiensMutation(s): 2 
Gene Names: mMyoMyo1_007468
UniProt
Find proteins for A0A7J7Z4L6 (Myotis myotis)
Explore A0A7J7Z4L6 
Go to UniProtKB:  A0A7J7Z4L6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A7J7Z4L6
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
6IC (Subject of Investigation/LOI)
Query on 6IC

Download Ideal Coordinates CCD File 
C [auth A]4-(4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol
C33 H31 F3 N6 O2
SCLLZBIBSFTLIN-INOGPEIASA-N
GDP (Subject of Investigation/LOI)
Query on GDP

Download Ideal Coordinates CCD File 
B [auth A]GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
MG (Subject of Investigation/LOI)
Query on MG

Download Ideal Coordinates CCD File 
D [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON CRYSTALLOGRAPHY
  • Resolution: 3.00 Å
  • R-Value Free: 0.337 
  • R-Value Work: 0.310 
  • R-Value Observed: 0.313 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 38.88α = 90
b = 49.28β = 90
c = 87.2γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.19.2

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2023-08-02 
  • Deposition Author(s): Li, X.M.

Funding OrganizationLocationGrant Number
Not fundedChina--

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-02
    Type: Initial release
  • Version 1.1: 2023-08-16
    Changes: Data collection, Database references, Structure summary