Download MendeleyPost-crystallization protection of protein crystals
Morita, S., Muroyama, H., Itabashi, T., Nagae, T., Takeuchi, S., Okada, T., Tomoike, F.To be published.
7VCG
Thaumatin protected by alginate gel
- PDB DOI: https://doi.org/10.2210/pdb7VCG/pdb
- Classification: PLANT PROTEIN
- Organism(s): Thaumatococcus daniellii
- Mutation(s): No
- Deposited: 2021-09-03 Released: 2022-09-07
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.162
- R-Value Work: 0.148
- R-Value Observed: 0.148
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Thaumatin I | 206 | Thaumatococcus daniellii | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for P02883 (Thaumatococcus daniellii) Explore P02883 Go to UniProtKB: P02883 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P02883 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| TLA Query on TLA | B [auth A] | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | ||
| GOL Query on GOL | C [auth A], D [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.25 Å
- R-Value Free: 0.162
- R-Value Work: 0.148
- R-Value Observed: 0.148
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.945 | α = 90 |
| b = 57.945 | β = 90 |
| c = 150.235 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-09-07 Deposition Author(s): Muroyama, H., Tomoike, F., Nagae, T., Okada, T.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2022-09-07
Type: Initial release - Version 1.1: 2023-11-29
Changes: Data collection, Refinement description
