7UQC

phospho-GlialCAM peptide AA370-389 with Fab MS39p2w174

PDB DOI: https://doi.org/10.2210/pdb7UQC/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2022-04-19 Released: 2023-10-25
Deposition Author(s): Lanz, T.V., Robinson, W.H., Fernandez, D.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free: 0.237
R-Value Work: 0.176
R-Value Observed: 0.179

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.0 of the entry. See complete history.

Literature

Evolution of Antibody Reactivity against EBV EBNA1 to Molecular Mimicry with GlialCAM

Lanz, T.V., Robinson, W.H., Fernandez, D.

To be published.

Macromolecule Content

Total Structure Weight: 195.41 kDa
Atom Count: 13,969
Modelled Residue Count: 1,784
Deposited Residue Count: 1,792
Unique protein chains: 3

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab MS39p2w174 Light Chain	A, D [auth G], F [auth I], H [auth D]	219	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Fab MS39p2w174 Heavy Chain	B, E [auth H], G [auth J], I [auth E]	219	Homo sapiens	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Hepatocyte cell adhesion molecule	C, J [auth F]	20	Homo sapiens	Mutation(s): 0 Gene Names: HEPACAM
UniProt & NIH Common Fund Data Resources
Find proteins for Q14CZ8 (Homo sapiens) Explore Q14CZ8 Go to UniProtKB: Q14CZ8
PHAROS: Q14CZ8 GTEx: ENSG00000165478
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q14CZ8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 (Subject of Investigation/LOI) Query on SO4 Download Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain Q [auth I] MOL2 format, chain K [auth A] MOL2 format, chain Q [auth I]	K [auth A], Q [auth I]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain K [auth A] Focus chain Q [auth I] Interactions & Density Focus chain K [auth A] Focus chain Q [auth I]
CL (Subject of Investigation/LOI) Query on CL Download Ideal Coordinates CCD File SDF format, chain L [auth B] SDF format, chain M [auth G] SDF format, chain N [auth G] SDF format, chain O [auth H] SDF format, chain P [auth H] SDF format, chain R [auth I] SDF format, chain S [auth I] SDF format, chain T [auth J] SDF format, chain U [auth J] SDF format, chain V [auth E] SDF format, chain W [auth E] SDF format, chain X [auth F] MOL2 format, chain L [auth B] MOL2 format, chain M [auth G] MOL2 format, chain N [auth G] MOL2 format, chain O [auth H] MOL2 format, chain P [auth H] MOL2 format, chain R [auth I] MOL2 format, chain S [auth I] MOL2 format, chain T [auth J] MOL2 format, chain U [auth J] MOL2 format, chain V [auth E] MOL2 format, chain W [auth E] MOL2 format, chain X [auth F]	L [auth B] M [auth G] N [auth G] O [auth H] P [auth H] L [auth B], M [auth G], N [auth G], O [auth H], P [auth H], R [auth I], S [auth I], T [auth J], U [auth J], V [auth E], W [auth E], X [auth F]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain L [auth B] Focus chain M [auth G] Focus chain N [auth G] Focus chain O [auth H] Focus chain P [auth H] Focus chain R [auth I] Focus chain S [auth I] Focus chain T [auth J] Focus chain U [auth J] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth F] Interactions & Density Focus chain L [auth B] Focus chain M [auth G] Focus chain N [auth G] Focus chain O [auth H] Focus chain P [auth H] Focus chain R [auth I] Focus chain S [auth I] Focus chain T [auth J] Focus chain U [auth J] Focus chain V [auth E] Focus chain W [auth E] Focus chain X [auth F]