7SZO

Structure of a bacterial fimbrial tip containing FocH


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.246 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Recombinant FimH Adhesin Demonstrates How the Allosteric Catch Bond Mechanism Can Support Fast and Strong Bacterial Attachment in the Absence of Shear.

Thomas, W.E.Carlucci, L.Yakovenko, O.Interlandi, G.Le Trong, I.Aprikian, P.Magala, P.Larson, L.Sledneva, Y.Tchesnokova, V.Stenkamp, R.E.Sokurenko, E.V.

(2022) J Mol Biol 434: 167681-167681

  • DOI: https://doi.org/10.1016/j.jmb.2022.167681
  • Primary Citation of Related Structures:  
    7SZO

  • PubMed Abstract: 

    The FimH protein of Escherichia coli is a model two-domain adhesin that is able to mediate an allosteric catch bond mechanism of bacterial cell attachment, where the mannose-binding lectin domain switches from an 'inactive' conformation with fast binding to mannose to an 'active' conformation with slow detachment from mannose. Because mechanical tensile force favors separation of the domains and, thus, FimH activation, it has been thought that the catch bonds can only be manifested in a fluidic shear-dependent mode of adhesion. Here, we used recombinant FimH variants with a weakened inter-domain interaction and show that a fast and sustained allosteric activation of FimH can also occur under static, non-shear conditions. Moreover, it appears that lectin domain conformational activation happens intrinsically at a constant rate, independently from its ability to interact with the pilin domain or mannose. However, the latter two factors control the rate of FimH deactivation. Thus, the allosteric catch bond mechanism can be a much broader phenomenon involved in both fast and strong cell-pathogen attachments under a broad range of hydrodynamic conditions. This concept that allostery can enable more effective receptor-ligand interactions is fundamentally different from the conventional wisdom that allostery provides a mechanism to turn binding off under specific conditions.


  • Organizational Affiliation

    Department of Bioengineering, University of Washington, Seattle, WA 98115, United States. Electronic address: wendyt@uw.edu.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Chaperone protein FimCA [auth C],
F [auth I]
205Escherichia coliMutation(s): 0 
Gene Names: fimC
UniProt
Find proteins for P31697 (Escherichia coli (strain K12))
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Go to UniProtKB:  P31697
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UniProt GroupP31697
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
FimF proteinB [auth E],
C [auth F],
G [auth K],
H [auth L]
154Escherichia coliMutation(s): 0 
Gene Names: fimFfimF_1fimF_2
UniProt
Find proteins for P08189 (Escherichia coli (strain K12))
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Go to UniProtKB:  P08189
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UniProt GroupP08189
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
FimGD [auth G],
I [auth M]
144Escherichia coliMutation(s): 0 
Gene Names: fimG
UniProt
Find proteins for P08190 (Escherichia coli (strain K12))
Explore P08190 
Go to UniProtKB:  P08190
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UniProt GroupP08190
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
FimH,F1C putative fimbrial adhesin fusionE [auth H],
J [auth N]
279Escherichia coliMutation(s): 0 
Gene Names: 
UniProt
Find proteins for P08191 (Escherichia coli (strain K12))
Explore P08191 
Go to UniProtKB:  P08191
Find proteins for A8KI79 (Escherichia coli)
Explore A8KI79 
Go to UniProtKB:  A8KI79
Entity Groups  
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UniProt GroupsA8KI79P08191
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.274 
  • R-Value Work: 0.245 
  • R-Value Observed: 0.246 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 214.777α = 90
b = 214.777β = 90
c = 532.051γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
HKL-2000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
REFMACphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not fundedUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-29
    Type: Initial release
  • Version 1.1: 2022-07-27
    Changes: Database references
  • Version 1.2: 2022-08-31
    Changes: Database references
  • Version 1.3: 2023-10-18
    Changes: Data collection, Refinement description