7SQW

Structure of the KcsA-W67F mutant with the activation gate in the closed conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.236 

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This is version 1.1 of the entry. See complete history


Literature

The nonconducting W434F mutant adopts upon membrane depolarization an inactivated-like state that differs from wild-type Shaker-IR potassium channels.

Coonen, L.Martinez-Morales, E.Van De Sande, D.V.Snyders, D.J.Cortes, D.M.Cuello, L.G.Labro, A.J.

(2022) Sci Adv 8: eabn1731-eabn1731

  • DOI: https://doi.org/10.1126/sciadv.abn1731
  • Primary Citation of Related Structures:  
    7SQW

  • PubMed Abstract: 

    Voltage-gated K + (Kv) channels mediate the flow of K + across the cell membrane by regulating the conductive state of their activation gate (AG). Several Kv channels display slow C-type inactivation, a process whereby their selectivity filter (SF) becomes less or nonconductive. It has been proposed that, in the fast inactivation-removed Shaker-IR channel, the W434F mutation epitomizes the C-type inactivated state because it functionally accelerates this process. By introducing another pore mutation that prevents AG closure, P475D, we found a way to record ionic currents of the Shaker-IR-W434F-P475D mutant at hyperpolarized membrane potentials as the W434F-mutant SF recovers from its inactivated state. This W434F conductive state lost its high K + over Na + selectivity, and even NMDG + can permeate, features not observed in a wild-type SF. This indicates that, at least during recovery from inactivation, the W434F-mutant SF transitions to a widened and noncationic specific conformation.


  • Organizational Affiliation

    Department of Biomedical Sciences, Faculty of Pharmaceutical, Biomedical and Veterinary Sciences, University of Antwerp, 2610 Antwerp, Belgium.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Fragment219Mus musculusMutation(s): 0 
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Antibody Fragment212Mus musculusMutation(s): 0 
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Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
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  • Reference Sequence
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
KcsA potassium channel103StreptomycesMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P0A333 (Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Explore P0A333 
Go to UniProtKB:  P0A333
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP0A333
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.21 Å
  • R-Value Free: 0.273 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.236 
  • Space Group: I 4
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 153.962α = 90
b = 153.962β = 90
c = 75.804γ = 90
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesR01GM097159
Other governmentBelgiumBOF Ghent University

Revision History  (Full details and data files)

  • Version 1.0: 2022-10-12
    Type: Initial release
  • Version 1.1: 2023-10-18
    Changes: Data collection, Refinement description