7SPN | pdb_00007spn

Crystal structure of IS11, a thermophilic esterase

PDB DOI: https://doi.org/10.2210/pdb7SPN/pdb

Classification: HYDROLASE
Organism(s): Dehalococcoidia bacterium
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-11-02 Released: 2022-08-24
Deposition Author(s): Stogios, P.J., Evdokimova, E., Khusnutdinova, A., Yakunin, A.F., Savchenko, A.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å
R-Value Free:
0.258 (Depositor), 0.255 (DCC)
R-Value Work:
0.197 (Depositor), 0.195 (DCC)
R-Value Observed:
0.203 (Depositor)

Starting Model: in silico
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This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of IS11, a thermophilic esterase

Yakunin, A.F.

To be published.

Macromolecule Content

Total Structure Weight: 98.95 kDa
Atom Count: 7,013
Modeled Residue Count: 911
Deposited Residue Count: 912
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
IS11	A, B	456	Dehalococcoidia bacterium	Mutation(s): 0
UniProt
Find proteins for A0ACD6B9V6 (Dehalococcoidia bacterium) Explore A0ACD6B9V6 Go to UniProtKB: A0ACD6B9V6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0ACD6B9V6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.92 Å
R-Value Free: 0.258 (Depositor), 0.255 (DCC)
R-Value Work: 0.197 (Depositor), 0.195 (DCC)
R-Value Observed: 0.203 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.216	α = 90
b = 103.359	β = 103.481
c = 94.857	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PHENIX	phasing
PHENIX	model building
Coot	model building

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2022-08-24

Deposition Author(s):

Khusnutdinova, A.

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2022-08-24
Type: Initial release
Version 1.1: 2024-04-03
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.