7SP5

Crystal Structure of a Eukaryotic Phosphate Transporter


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.235 

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Literature

Crystal structure of a eukaryotic phosphate transporter.

Pedersen, B.P.Kumar, H.Waight, A.B.Risenmay, A.J.Roe-Zurz, Z.Chau, B.H.Schlessinger, A.Bonomi, M.Harries, W.Sali, A.Johri, A.K.Stroud, R.M.

(2013) Nature 496: 533-536

  • DOI: https://doi.org/10.1038/nature12042
  • Primary Citation of Related Structures:  
    7SP5

  • PubMed Abstract: 

    Phosphate is crucial for structural and metabolic needs, including nucleotide and lipid synthesis, signalling and chemical energy storage. Proton-coupled transporters of the major facilitator superfamily (MFS) are essential for phosphate uptake in plants and fungi, and also have a function in sensing external phosphate levels as transceptors. Here we report the 2.9 Å structure of a fungal (Piriformospora indica) high-affinity phosphate transporter, PiPT, in an inward-facing occluded state, with bound phosphate visible in the membrane-buried binding site. The structure indicates both proton and phosphate exit pathways and suggests a modified asymmetrical 'rocker-switch' mechanism of phosphate transport. PiPT is related to several human transporter families, most notably the organic cation and anion transporters of the solute carrier family (SLC22), which are implicated in cancer-drug resistance. We modelled representative cation and anion SLC22 transporters based on the PiPT structure to surmise the structural basis for substrate binding and charge selectivity in this important family. The PiPT structure demonstrates and expands on principles of substrate transport by the MFS transporters and illuminates principles of phosphate uptake in particular.


  • Organizational Affiliation

    Department of Biochemistry and Biophysics, University of California, San Francisco, California 94158, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosphate transporter
A, B
530Serendipita indicaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for G4TS85 (Serendipita indica (strain DSM 11827))
Explore G4TS85 
Go to UniProtKB:  G4TS85
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG4TS85
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.235 
  • Space Group: H 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 174.51α = 90
b = 174.51β = 90
c = 173.41γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XDSdata scaling
SHARPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States24485

Revision History  (Full details and data files)

  • Version 1.0: 2021-11-17
    Type: Initial release