7S1T

Structure of the human POT1-TPP1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.253 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

POT1-TPP1 binding stabilizes POT1, promoting efficient telomere maintenance.

Aramburu, T.Kelich, J.Rice, C.Skordalakes, E.

(2022) Comput Struct Biotechnol J 20: 675-684

  • DOI: https://doi.org/10.1016/j.csbj.2022.01.005
  • Primary Citation of Related Structures:  
    7S1O, 7S1T, 7S1U

  • PubMed Abstract: 

    Telomeric POT1-TPP1 binding is critical to telomere maintenance and disruption of this complex may lead to cancer. Current data suggests a reduction of intracellular POT1 levels in the absence of TPP1. Here we provide evidence of POT1 plasticity that contributes to its lack of stability in the absence of TPP1 binding. Structural data reveals inter- and intramolecular POT1C domain flexibility in the absence of TPP1. Thermostability and proteolytic resistance assays show that POT1C and the mutant complex POT1C(Q623H)-TPP1(PBD) are less stable than the wild type POT1C-TPP1(PBD), suggesting that TPP1 binding to POT1 stabilizes POT1C and makes it less accessible to proteasomal degradation in the cell. Disruption of the POT1-TPP1 complex such as through cancer-associated mutations leads to a reduction of intracellular POT1, telomere uncapping, and telomere associated DNA damage response (DDR). DDR in turn leads to senescence or genomic instability and oncogenesis.


  • Organizational Affiliation

    The Wistar Institute, 3601 Spruce St, Philadelphia, PA 19104, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protection of telomeres protein 1A,
B [auth D],
C [auth G],
D [auth J]
313Homo sapiensMutation(s): 0 
Gene Names: POT1
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NUX5 (Homo sapiens)
Explore Q9NUX5 
Go to UniProtKB:  Q9NUX5
PHAROS:  Q9NUX5
GTEx:  ENSG00000128513 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9NUX5
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Adrenocortical dysplasia protein homologE [auth B],
F [auth E],
G [auth H],
H [auth K]
93Homo sapiensMutation(s): 0 
Gene Names: ACDPIP1PTOPTINT1TPP1
UniProt & NIH Common Fund Data Resources
Find proteins for Q96AP0 (Homo sapiens)
Explore Q96AP0 
Go to UniProtKB:  Q96AP0
PHAROS:  Q96AP0
GTEx:  ENSG00000102977 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96AP0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.250 
  • R-Value Observed: 0.253 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 70.88α = 76.76
b = 70.98β = 84.61
c = 103.79γ = 70.55
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-19
    Type: Initial release
  • Version 1.1: 2022-02-23
    Changes: Database references
  • Version 1.2: 2023-10-18
    Changes: Data collection, Refinement description