7R4H

phospho-STING binding to adaptor protein complex-1


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Clathrin-associated AP-1 controls termination of STING signalling.

Liu, Y.Xu, P.Rivara, S.Liu, C.Ricci, J.Ren, X.Hurley, J.H.Ablasser, A.

(2022) Nature 610: 761-767

  • DOI: https://doi.org/10.1038/s41586-022-05354-0
  • Primary Citation of Related Structures:  
    7R4H

  • PubMed Abstract: 

    Stimulator of interferon genes (STING) functions downstream of cyclic GMP-AMP synthase in DNA sensing or as a direct receptor for bacterial cyclic dinucleotides and small molecules to activate immunity during infection, cancer and immunotherapy 1-10 . Precise regulation of STING is essential to ensure balanced immune responses and prevent detrimental autoinflammation 11-16 . After activation, STING, a transmembrane protein, traffics from the endoplasmic reticulum to the Golgi, where its phosphorylation by the protein kinase TBK1 enables signal transduction 17-20 . The mechanism that ends STING signalling at the Golgi remains unknown. Here we show that adaptor protein complex 1 (AP-1) controls the termination of STING-dependent immune activation. We find that AP-1 sorts phosphorylated STING into clathrin-coated transport vesicles for delivery to the endolysosomal system, where STING is degraded 21 . We identify a highly conserved dileucine motif in the cytosolic C-terminal tail (CTT) of STING that, together with TBK1-dependent CTT phosphorylation, dictates the AP-1 engagement of STING. A cryo-electron microscopy structure of AP-1 in complex with phosphorylated STING explains the enhanced recognition of TBK1-activated STING. We show that suppression of AP-1 exacerbates STING-induced immune responses. Our results reveal a structural mechanism of negative regulation of STING and establish that the initiation of signalling is inextricably associated with its termination to enable transient activation of immunity.


  • Organizational Affiliation

    Global Health Institute, Swiss Federal Institute of Technology Lausanne (EPFL), Lausanne, Switzerland.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
AP-1 complex subunit beta-1A [auth B]584Homo sapiensMutation(s): 2 
Gene Names: AP1B1ADTB1BAM22CLAPB2
Membrane Entity: Yes 
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Find proteins for Q10567 (Homo sapiens)
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Go to UniProtKB:  Q10567
PHAROS:  Q10567
GTEx:  ENSG00000100280 
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UniProt GroupQ10567
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ADP-ribosylation factor 1B [auth C],
D [auth H]
165Homo sapiensMutation(s): 1 
Gene Names: ARF1
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P84077 (Homo sapiens)
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PHAROS:  P84077
GTEx:  ENSG00000143761 
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UniProt GroupP84077
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
AP-1 complex subunit gamma-1C [auth G]595Mus musculusMutation(s): 0 
Gene Names: Ap1g1AdtgClapg1
Membrane Entity: Yes 
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Find proteins for P22892 (Mus musculus)
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IMPC:  MGI:101919
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UniProt GroupP22892
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Stimulator of interferon genes proteinE [auth L]9Homo sapiensMutation(s): 0 
Gene Names: STING1ERISMITASTINGTMEM173
Membrane Entity: Yes 
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Find proteins for Q86WV6 (Homo sapiens)
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PHAROS:  Q86WV6
GTEx:  ENSG00000184584 
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UniProt GroupQ86WV6
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
AP-1 complex subunit mu-1F [auth M]423Mus musculusMutation(s): 0 
Gene Names: Ap1m1Cltnm
Membrane Entity: Yes 
UniProt
Find proteins for P35585 (Mus musculus)
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UniProt GroupP35585
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
AP-1 complex subunit sigma-3G [auth S]154Homo sapiensMutation(s): 0 
Gene Names: AP1S3
Membrane Entity: Yes 
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Find proteins for Q96PC3 (Homo sapiens)
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Go to UniProtKB:  Q96PC3
PHAROS:  Q96PC3
GTEx:  ENSG00000152056 
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UniProt GroupQ96PC3
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.34 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Molecular Biology Organization (EMBO)European UnionALTF-184

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-14
    Type: Initial release
  • Version 1.1: 2022-11-02
    Changes: Database references
  • Version 1.2: 2022-11-09
    Changes: Database references