7QWI | pdb_00007qwi

Vanadate complex of the vanadium-dependent bromoperoxidase from Corallina pilulifera


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 
    0.195 (Depositor), 0.195 (DCC) 
  • R-Value Work: 
    0.144 (Depositor), 0.144 (DCC) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7QWI

This is version 1.1 of the entry. See complete history

Literature

R396W mutant of the vanadium-dependent bromoperoxidase from Corallina pilulifera

Isupov, M.N.Mitchell, D.Littelchild, J.A.Garcia-Rodriguez, E.

To be published.

Macromolecule Content 

  • Total Structure Weight: 269.2 kDa 
  • Atom Count: 22,153 
  • Modeled Residue Count: 2,388 
  • Deposited Residue Count: 2,392 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Vanadium-dependent bromoperoxidaseA [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
598Corallina piluliferaMutation(s): 1 
EC: 1.11.1.18
UniProt
Find proteins for O81959 (Corallina pilulifera)
Explore O81959 
Go to UniProtKB:  O81959
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO81959
Sequence Annotations
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Reference Sequence

Small Molecules

Ligands 8 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PGE

Query on PGE



Download:Ideal Coordinates CCD File
EC [auth DDD],
RB [auth CCC],
U [auth AAA],
WA [auth BBB]
TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
144

Query on 144



Download:Ideal Coordinates CCD File
CA [auth BBB]
CC [auth DDD]
DC [auth DDD]
FB [auth CCC]
IA [auth BBB]
CA [auth BBB],
CC [auth DDD],
DC [auth DDD],
FB [auth CCC],
IA [auth BBB],
J [auth AAA],
JA [auth BBB],
O [auth AAA],
SB [auth CCC],
VB [auth DDD],
YA [auth BBB]
TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
C4 H12 N O3
DRDCQJADRSJFFD-UHFFFAOYSA-N
VO4
(Subject of Investigation/LOI)

Query on VO4



Download:Ideal Coordinates CCD File
AB [auth CCC],
DA [auth BBB],
E [auth AAA],
XB [auth DDD]
VANADATE ION
O4 V
LSGOVYNHVSXFFJ-UHFFFAOYSA-N
PEG

Query on PEG



Download:Ideal Coordinates CCD File
AA [auth AAA]
FC [auth DDD]
GB [auth CCC]
IB [auth CCC]
K [auth AAA]
AA [auth AAA],
FC [auth DDD],
GB [auth CCC],
IB [auth CCC],
K [auth AAA],
KA [auth BBB],
M [auth AAA],
NA [auth BBB],
P [auth AAA],
QB [auth CCC],
XA [auth BBB],
Y [auth AAA],
Z [auth AAA]
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
BR
(Subject of Investigation/LOI)

Query on BR



Download:Ideal Coordinates CCD File
BC [auth DDD]
CB [auth CCC]
EB [auth CCC]
FA [auth BBB]
G [auth AAA]
BC [auth DDD],
CB [auth CCC],
EB [auth CCC],
FA [auth BBB],
G [auth AAA],
HA [auth BBB],
I [auth AAA],
IC [auth DDD],
KB [auth CCC],
PA [auth BBB],
Q [auth AAA],
ZB [auth DDD]
BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
EDO

Query on EDO



Download:Ideal Coordinates CCD File
JC [auth DDD]
KC [auth DDD]
LB [auth CCC]
LC [auth DDD]
MB [auth CCC]
JC [auth DDD],
KC [auth DDD],
LB [auth CCC],
LC [auth DDD],
MB [auth CCC],
MC [auth DDD],
NB [auth CCC],
NC [auth DDD],
OB [auth CCC],
PB [auth CCC],
QA [auth BBB],
R [auth AAA],
RA [auth BBB],
S [auth AAA],
SA [auth BBB],
T [auth AAA],
TA [auth BBB],
UA [auth BBB],
V [auth AAA],
VA [auth BBB],
W [auth AAA],
WB [auth DDD],
X [auth AAA]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
CA
(Subject of Investigation/LOI)

Query on CA



Download:Ideal Coordinates CCD File
BB [auth CCC],
EA [auth BBB],
F [auth AAA],
YB [auth DDD]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
NA

Query on NA



Download:Ideal Coordinates CCD File
AC [auth DDD]
BA [auth AAA]
DB [auth CCC]
GA [auth BBB]
GC [auth DDD]
AC [auth DDD],
BA [auth AAA],
DB [auth CCC],
GA [auth BBB],
GC [auth DDD],
H [auth AAA],
HB [auth CCC],
HC [auth DDD],
JB [auth CCC],
L [auth AAA],
LA [auth BBB],
MA [auth BBB],
N [auth AAA],
OA [auth BBB],
OC [auth DDD],
TB [auth CCC],
UB [auth DDD],
ZA [auth BBB]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
BYR
Query on BYR
A [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
L-PEPTIDE LINKINGC9 H10 Br N O3TYR
I4O
Query on I4O
A [auth AAA],
B [auth BBB],
C [auth CCC],
D [auth DDD]
L-PEPTIDE LINKINGC6 H8 N3 O6 VHIS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free:  0.195 (Depositor), 0.195 (DCC) 
  • R-Value Work:  0.144 (Depositor), 0.144 (DCC) 
Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 199.601α = 90
b = 199.601β = 90
c = 199.601γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
Omodel building
Cootmodel building

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research Council (BBSRC)United Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2023-02-01
    Type: Initial release
  • Version 1.1: 2024-02-07
    Changes: Data collection, Refinement description