7QWD | pdb_00007qwd

CC-Type2-(Ug)4

PDB DOI: https://doi.org/10.2210/pdb7QWD/pdb

Classification: DE NOVO PROTEIN
Organism(s): synthetic construct
Mutation(s): No

Deposited: 2022-01-25 Released: 2023-02-01
Deposition Author(s): Martin, F.J.O., Zieleniewski, F., Dawson, W.M., Woolfson, D.N.
Funding Organization(s): European Research Council (ERC), Engineering and Physical Sciences Research Council, Biotechnology and Biological Sciences Research Council (BBSRC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.35 Å
R-Value Free:
0.249 (Depositor), 0.245 (DCC)
R-Value Work:
0.214 (Depositor), 0.215 (DCC)
R-Value Observed:
0.216 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 7QWD

This is version 1.0 of the entry. See complete history.

Literature

CC-Type2-(Ug)4

Martin, F.J.O., Zieleniewski, F., Dawson, W.M., Woolfson, D.N.

To be published.

Macromolecule Content

Total Structure Weight: 16.75 kDa
Atom Count: 1,200
Modeled Residue Count: 152
Deposited Residue Count: 160
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CC-Type2-(Ug)4	A, B, C, D, E	32	synthetic construct	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PO4 Query on PO4 Download:Ideal Coordinates CCD File SDF format, chain F [auth E] MOL2 format, chain F [auth E] mmCIF format, chain F [auth E]	F [auth E]	PHOSPHATE ION O₄ P NBIIXXVUZAFLBC-UHFFFAOYSA-K		Interactions Focus chain F [auth E] Interactions & Density Focus chain F [auth E]

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
4BF Query on 4BF	A, B, C, D, E	L-PEPTIDE LINKING	C₉ H₁₀ Br N O₂		TYR
AIB Query on AIB	A, B, C, D, E	L-PEPTIDE LINKING	C₄ H₉ N O₂		ALA

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.35 Å
R-Value Free: 0.249 (Depositor), 0.245 (DCC)
R-Value Work: 0.214 (Depositor), 0.215 (DCC)
R-Value Observed: 0.216 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.108	α = 90
b = 48.994	β = 90
c = 89.376	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
DIALS	data reduction
Aimless	data scaling
SHELXDE	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-02-01

Deposition Author(s):

Zieleniewski, F.

Funding Organization	Location	Grant Number
European Research Council (ERC)	United Kingdom	340764
Engineering and Physical Sciences Research Council	United Kingdom	EP/G036764
Biotechnology and Biological Sciences Research Council (BBSRC)	United Kingdom	BB R00661X 1

Revision History (Full details and data files)

Version 1.0: 2023-02-01
Type: Initial release

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