7QOO

Structure of the human inner kinetochore CCAN complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

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This is version 1.1 of the entry. See complete history


Literature

Structure of the human inner kinetochore CCAN complex and its significance for human centromere organization.

Pesenti, M.E.Raisch, T.Conti, D.Walstein, K.Hoffmann, I.Vogt, D.Prumbaum, D.Vetter, I.R.Raunser, S.Musacchio, A.

(2022) Mol Cell 82: 2113

  • DOI: https://doi.org/10.1016/j.molcel.2022.04.027
  • Primary Citation of Related Structures:  
    7QOO

  • PubMed Abstract: 

    Centromeres are specialized chromosome loci that seed the kinetochore, a large protein complex that effects chromosome segregation. A 16-subunit complex, the constitutive centromere associated network (CCAN), connects between the specialized centromeric chromatin, marked by the histone H3 variant CENP-A, and the spindle-binding moiety of the kinetochore. Here, we report a cryo-electron microscopy structure of human CCAN. We highlight unique features such as the pseudo GTPase CENP-M and report how a crucial CENP-C motif binds the CENP-LN complex. The CCAN structure has implications for the mechanism of specific recognition of the CENP-A nucleosome. A model consistent with our structure depicts the CENP-C-bound nucleosome as connected to the CCAN through extended, flexible regions of CENP-C. An alternative model identifies both CENP-C and CENP-N as specificity determinants but requires CENP-N to bind CENP-A in a mode distinct from the classical nucleosome octamer.


  • Organizational Affiliation

    Department of Mechanistic Cell Biology, Max-Planck Institute of Molecular Physiology, Otto-Hahn-Straße 11, 44227 Dortmund, Germany.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein CA [auth C]544Homo sapiensMutation(s): 0 
Gene Names: CENPCCENPC1ICEN7
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PHAROS:  Q03188
GTEx:  ENSG00000145241 
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UniProt GroupQ03188
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein HB [auth H]247Homo sapiensMutation(s): 0 
Gene Names: CENPHICEN35
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PHAROS:  Q9H3R5
GTEx:  ENSG00000153044 
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UniProt GroupQ9H3R5
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein IC [auth I]756Homo sapiensMutation(s): 0 
Gene Names: CENPIFSHPRH1ICEN19LRPR1
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PHAROS:  Q92674
GTEx:  ENSG00000102384 
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UniProt GroupQ92674
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein KD [auth K]269Homo sapiensMutation(s): 0 
Gene Names: CENPKICEN37FKSG14
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GTEx:  ENSG00000123219 
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein LE [auth L]344Homo sapiensMutation(s): 0 
Gene Names: CENPLC1orf155ICEN33
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GTEx:  ENSG00000120334 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein MF [auth M]180Homo sapiensMutation(s): 0 
Gene Names: CENPMC22orf18ICEN39PANE1
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PHAROS:  Q9NSP4
GTEx:  ENSG00000100162 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein NG [auth N]339Homo sapiensMutation(s): 0 
Gene Names: CENPNC16orf60ICEN32BM-309
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GTEx:  ENSG00000166451 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein OH [auth O]300Homo sapiensMutation(s): 0 
Gene Names: CENPOICEN36MCM21R
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GTEx:  ENSG00000138092 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein PI [auth P]288Homo sapiensMutation(s): 0 
Gene Names: CENPP
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Find proteins for Q6IPU0 (Homo sapiens)
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PHAROS:  Q6IPU0
GTEx:  ENSG00000188312 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein UJ [auth U]418Homo sapiensMutation(s): 0 
Gene Names: CENPUICEN24KLIP1MLF1IPPBIP1
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GTEx:  ENSG00000151725 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein QK [auth Q]268Homo sapiensMutation(s): 0 
Gene Names: CENPQC6orf139
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GTEx:  ENSG00000031691 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein RL [auth R]177Homo sapiensMutation(s): 0 
Gene Names: ITGB3BPCENPRNRIF3
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GTEx:  ENSG00000142856 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein TM [auth T]561Homo sapiensMutation(s): 0 
Gene Names: CENPTC16orf56ICEN22
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GTEx:  ENSG00000102901 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
Centromere protein WN [auth W]88Homo sapiensMutation(s): 0 
Gene Names: CENPWC6orf173CUG2
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Find proteins for Q5EE01 (Homo sapiens)
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GTEx:  ENSG00000203760 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Unknown proteinO [auth X]15Homo sapiensMutation(s): 0 
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTRELION3.1.2
RECONSTRUCTIONRELION3.1.2

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-06-08
    Type: Initial release
  • Version 1.1: 2022-06-15
    Changes: Database references