7PUB

Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mitoribosomal small subunit maturation involves formation of initiation-like complexes.

Lenarcic, T.Niemann, M.Ramrath, D.J.F.Calderaro, S.Flugel, T.Saurer, M.Leibundgut, M.Boehringer, D.Prange, C.Horn, E.K.Schneider, A.Ban, N.

(2022) Proc Natl Acad Sci U S A 119

  • DOI: https://doi.org/10.1073/pnas.2114710118
  • Primary Citation of Related Structures:  
    7PUA, 7PUB

  • PubMed Abstract: 

    Mitochondrial ribosomes (mitoribosomes) play a central role in synthesizing mitochondrial inner membrane proteins responsible for oxidative phosphorylation. Although mitoribosomes from different organisms exhibit considerable structural variations, recent insights into mitoribosome assembly suggest that mitoribosome maturation follows common principles and involves a number of conserved assembly factors. To investigate the steps involved in the assembly of the mitoribosomal small subunit (mt-SSU) we determined the cryoelectron microscopy structures of middle and late assembly intermediates of the Trypanosoma brucei mitochondrial small subunit (mt-SSU) at 3.6- and 3.7-Å resolution, respectively. We identified five additional assembly factors that together with the mitochondrial initiation factor 2 (mt-IF-2) specifically interact with functionally important regions of the rRNA, including the decoding center, thereby preventing premature mRNA or large subunit binding. Structural comparison of assembly intermediates with mature mt-SSU combined with RNAi experiments suggests a noncanonical role of mt-IF-2 and a stepwise assembly process, where modular exchange of ribosomal proteins and assembly factors together with mt-IF-2 ensure proper 9S rRNA folding and protein maturation during the final steps of assembly.


  • Organizational Affiliation

    Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, CH-8093 Zurich, Switzerland.


Macromolecules

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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
uS3mB [auth CC]74Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S5_C domain-containing proteinC [auth CE]435Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q38AX6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
bS6mD [auth CF]160Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38BW5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8, putativeE [auth CH]282Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q388R7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
uS9mF [auth CI]443Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q57W62 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
LysM domain-containing proteinG [auth CJ]817Trypanosoma brucei bruceiMutation(s): 4 
UniProt
Find proteins for Q57Z45 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mH [auth CK]326Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q389T7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
uS12mI [auth CL]87Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
uS14mJ [auth CN]166Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q580I0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
uS15mK [auth CO]429Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q4GZ99 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
bS16mL [auth CP]188Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q384N9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
30S Ribosomal protein S17, putativeM [auth CQ]307Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q38DP8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mN [auth CR]320Trypanosoma brucei bruceiMutation(s): 1 
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Find proteins for Q38AS2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
uS19mO [auth CS]244Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
bS21mP [auth CU]193Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q580M9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
mS22Q [auth Ca]602Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for Q38DR3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
mS23R [auth Cb]325Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
mS26S [auth Cd]440Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38DK6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
mS29T [auth Cg]498Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
mS33U [auth Ci]181Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57WW0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
mS34V [auth Cj]257Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57UK0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
mS35W [auth Ck]874Trypanosoma brucei bruceiMutation(s): 6 
UniProt
Find proteins for Q387C7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
mS37X [auth Cm]215Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38C96 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
mS38Y [auth Cn]250Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57VQ9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FYV4, mitochondrialZ [auth Cp]187Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q389L3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Superoxide dismutase, putativeAA [auth Cq]263Trypanosoma brucei bruceiMutation(s): 2 
EC: 1.15.1.1
UniProt
Find proteins for Q586A1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
Sod_Fe_C domain-containing proteinBA [auth Cr]439Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q585I1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
ECH_2 domain-containing proteinCA [auth Cv]1,211Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q383R4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
mS481,788Trypanosoma brucei bruceiMutation(s): 4 
UniProt
Find proteins for Q57UJ2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
mS49EA [auth DB]1,181Trypanosoma brucei bruceiMutation(s): 8 
UniProt
Find proteins for Q586P5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
mS50FA [auth DC]1,165Trypanosoma brucei bruceiMutation(s): 10 
UniProt
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
mS51GA [auth DD]812Trypanosoma brucei bruceiMutation(s): 2 
UniProt
Find proteins for Q385L8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
mS52HA [auth DE]747Trypanosoma brucei bruceiMutation(s): 2 
UniProt
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
mS53IA [auth DF]666Trypanosoma brucei bruceiMutation(s): 7 
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
mS54JA [auth DG]631Trypanosoma brucei bruceiMutation(s): 2 
UniProt
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
mS55KA [auth DH]581Trypanosoma brucei bruceiMutation(s): 3 
UniProt
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
mS56LA [auth DI]407Trypanosoma brucei bruceiMutation(s): 2 
UniProt
Find proteins for Q587C2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
mS57MA [auth DJ]396Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q584U8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
mS58NA [auth DK]324Trypanosoma brucei bruceiMutation(s): 2 
UniProt
Find proteins for Q38BP1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
mS59OA [auth DL]307Trypanosoma brucei bruceiMutation(s): 1 
UniProt
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
mS60PA [auth DM]294Trypanosoma brucei bruceiMutation(s): 5 
UniProt
Find proteins for Q57XL2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
mS61QA [auth DN]293Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q38D60 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
mS62RA [auth DO]282Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
mS63SA [auth DP]274Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q38F25 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
AKAP7_NLS domain-containing proteinTA [auth DQ]268Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q382E8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
mS65UA [auth DR]270Trypanosoma brucei bruceiMutation(s): 4 
UniProt
Find proteins for Q57UA2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
mS66VA [auth DS]261Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q388L7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
Rhodanese domain-containing proteinWA [auth DT]247Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q586G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-like domain-containing proteinXA [auth DU]228Trypanosoma brucei bruceiMutation(s): 2 
UniProt
Find proteins for Q582T9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
mS69YA [auth DV]183Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q57UZ6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
mS70ZA [auth DW]179Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q383N9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
mS71AB [auth DX]169Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q383G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
mS72BB [auth DY]163Trypanosoma brucei bruceiMutation(s): 1 
UniProt
Find proteins for Q57YD4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
mS73CB [auth DZ]94Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q587C4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
mS74DB [auth Da]64Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF3EB [auth F3]966Trypanosoma brucei bruceiMutation(s): 4 
UniProt
Find proteins for Q38E61 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF6FB [auth F6]676Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF7GB [auth F7]679Trypanosoma brucei bruceiMutation(s): 3 
UniProt
Find proteins for Q57UW6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF9HB [auth F9]608Trypanosoma brucei bruceiMutation(s): 6 
UniProt
Find proteins for Q57YC0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF22IB [auth FO]334Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q389F9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
DNA photolyase, putativeJB [auth Ff]848Trypanosoma brucei bruceiMutation(s): 8 
EC: 4.1.99.3
UniProt
Find proteins for Q382U6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl transferase-like proteinKB [auth Fg]550Trypanosoma brucei bruceiMutation(s): 5 
UniProt
Find proteins for Q38DK4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF37LB [auth Fh]318Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38A63 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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