7PUA

Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.60 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mitoribosomal small subunit maturation involves formation of initiation-like complexes.

Lenarcic, T.Niemann, M.Ramrath, D.J.F.Calderaro, S.Flugel, T.Saurer, M.Leibundgut, M.Boehringer, D.Prange, C.Horn, E.K.Schneider, A.Ban, N.

(2022) Proc Natl Acad Sci U S A 119

  • DOI: https://doi.org/10.1073/pnas.2114710118
  • Primary Citation of Related Structures:  
    7PUA, 7PUB

  • PubMed Abstract: 

    Mitochondrial ribosomes (mitoribosomes) play a central role in synthesizing mitochondrial inner membrane proteins responsible for oxidative phosphorylation. Although mitoribosomes from different organisms exhibit considerable structural variations, recent insights into mitoribosome assembly suggest that mitoribosome maturation follows common principles and involves a number of conserved assembly factors. To investigate the steps involved in the assembly of the mitoribosomal small subunit (mt-SSU) we determined the cryoelectron microscopy structures of middle and late assembly intermediates of the Trypanosoma brucei mitochondrial small subunit (mt-SSU) at 3.6- and 3.7-Å resolution, respectively. We identified five additional assembly factors that together with the mitochondrial initiation factor 2 (mt-IF-2) specifically interact with functionally important regions of the rRNA, including the decoding center, thereby preventing premature mRNA or large subunit binding. Structural comparison of assembly intermediates with mature mt-SSU combined with RNAi experiments suggests a noncanonical role of mt-IF-2 and a stepwise assembly process, where modular exchange of ribosomal proteins and assembly factors together with mt-IF-2 ensure proper 9S rRNA folding and protein maturation during the final steps of assembly.


  • Organizational Affiliation

    Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, CH-8093 Zurich, Switzerland.


Macromolecules

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
uS3mC [auth CC]74Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal_S5_C domain-containing proteinD [auth CE]435Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for D0A335 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
bS6mE [auth CF]160Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for Q38BW5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
30S ribosomal protein S8, putativeF [auth CH]282Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZZU9 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
uS9mG [auth CI]443Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for Q57W62 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
LysM domain-containing proteinH [auth CJ]817Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
uS11mI [auth CK]326Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q389T7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
uS12mJ [auth CL]87Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
uS14mK [auth CN]166Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q580I0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
uS15mL [auth CO]429Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for Q4GZ99 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
bS16mM [auth CP]188Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q384N9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
30S Ribosomal protein S17, putativeN [auth CQ]307Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
bS18mO [auth CR]320Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for D0A3A4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
uS19mP [auth CS]244Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for A0A3L6L621 (Trypanosoma brucei equiperdum)
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
bS21mQ [auth CU]193Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q580M9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
mS22R [auth Ca]602Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38DR3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
mS23S [auth Cb]325Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZNU0 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
mS26T [auth Cd]440Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for Q38DK6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
mS29U [auth Cg]498Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q585C2 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
mS33V [auth Ci]181Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for Q57WW0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
mS34W [auth Cj]257Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57UK0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
mS35X [auth Ck]874Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q387C7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
mS37Y [auth Cm]215Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38C96 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
mS38Z [auth Cn]250Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57VQ9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
Protein FYV4, mitochondrialAA [auth Cp]187Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q389L3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
mS49BA [auth DB]1,181Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZJE4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
mS50CA [auth DC]1,165Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for A0A3L6L3Q2 (Trypanosoma brucei equiperdum)
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
mS51DA [auth DD]812Trypanosoma brucei bruceiMutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
mS52EA [auth DE]747Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q386Q7 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
mS53FA [auth DF]666Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZXX4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
mS54GA [auth DG]631Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for C9ZNY4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
mS55HA [auth DH]581Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for A0A3L6LGC8 (Trypanosoma brucei equiperdum)
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
mS56IA [auth DI]407Trypanosoma brucei bruceiMutation(s): 0 
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Find proteins for A0A3L6L6C6 (Trypanosoma brucei equiperdum)
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
mS57JA [auth DJ]396Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
mS58KA [auth DK]324Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for A0A3L6L3U6 (Trypanosoma brucei equiperdum)
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
mS59LA [auth DL]307Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for D0A232 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
mS62MA [auth DO]282Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q383D1 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
mS63NA [auth DP]274Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZXR0 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
mS65OA [auth DR]270Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
Rhodanese domain-containing proteinPA [auth DT]247Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q586G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-like domain-containing proteinQA [auth DU]228Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZKC1 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
mS69RA [auth DV]183Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57UZ6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
mS70SA [auth DW]179Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for D0A8P6 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
mS71TA [auth DX]169Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q383G5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
mS72UA [auth DY]163Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57YD4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
mS73VA [auth DZ]94Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q587C4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
mS74WA [auth Da]64Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for A0A3L6KY67 (Trypanosoma brucei equiperdum)
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
PPR_long domain-containing proteinXA [auth F2]1,024Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZIL7 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF3YA [auth F3]966Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38E61 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF5ZA [auth F5]754Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
DUF4460 domain-containing proteinAB [auth F6]676Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38FQ8 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF7BB [auth F7]679Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57UW6 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF9CB [auth F9]607Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZSL5 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF21DB [auth FM],
EB [auth FN]
370Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZJW2 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF22FB [auth FO]334Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q389F9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF23GB [auth FP]349Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for D0A963 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
LMWPc domain-containing proteinHB [auth FW]263Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q38FI3 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF27IB [auth FX]239Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57YK5 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF29JB [auth FZ]178Trypanosoma brucei bruceiMutation(s): 0 
UniProt
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
mt-SAF31KB [auth Fb]151Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q581U4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl carrier proteinLB [auth Fc]148Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q57WW9 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
DUF4379 domain-containing proteinMB [auth Fd]143Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for Q581T4 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
DNA photolyase, putativeNB [auth Ff]848Trypanosoma brucei bruceiMutation(s): 0 
EC: 4.1.99.3
UniProt
Find proteins for D0A9A9 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
Acyl transferase-like protein, putativeOB [auth Fg]550Trypanosoma brucei bruceiMutation(s): 0 
UniProt
Find proteins for C9ZYZ4 (Trypanosoma brucei gambiense (strain MHOM/CI/86/DAL972))
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Sequence Clusters30% Identity