7OSC | pdb_00007osc

Solution structure of antimicrobial peptide cathelicidin-1 PcDode from sperm whale Physeter catodon

PDB DOI: https://doi.org/10.2210/pdb7OSC/pdb
BMRB: 34633

Classification: ANTIMICROBIAL PROTEIN
Organism(s): Physeter macrocephalus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2021-06-08 Released: 2021-09-15
Deposition Author(s): Mironov, P.A., Myshkin, M.Y., Shenkarev, Z.O.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

wwPDB Validation 3D Report Full Report

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This is version 1.1 of the entry. See complete history.

Literature

Dodecapeptide Cathelicidins of Cetartiodactyla: Structure, Mechanism of Antimicrobial Action, and Synergistic Interaction With Other Cathelicidins

Bolosov, I.A., Panteleev, P.V., Sychev, S.V., Sukhanov, S.V., Mironov, P.A., Myshkin, M.Y., Shenkarev, Z.O., Ovchinnikova, T.V.

(2021) Front Microbiol 12: 2249

DOI: https://doi.org/10.3389/fmicb.2021.725526

Macromolecule Content

Total Structure Weight: 2.79 kDa
Atom Count: 190
Modeled Residue Count: 24
Deposited Residue Count: 24
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
cathelicidin-1-like	A	24	Physeter macrocephalus	Mutation(s): 0 Gene Names: LOC102973809
UniProt
Find proteins for A0A2Y9FJE4 (Physeter macrocephalus) Explore A0A2Y9FJE4 Go to UniProtKB: A0A2Y9FJE4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2Y9FJE4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
PCA Query on PCA	A	L-PEPTIDE LINKING	C₅ H₇ N O₃		GLN

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 200
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations

Structure Validation

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Entry History

Deposition Data

Released Date: 2021-09-15

Deposition Author(s):

Shenkarev, Z.O.

Revision History (Full details and data files)

Version 1.0: 2021-09-15
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.