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Solution structure of antimicrobial peptide cathelicidin-1 PcDode from sperm whale Physeter catodon
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H TOCSY 0.6 mM PCdode, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.01 mM 4.4 1 atm 313 Bruker AVANCE III 600 2 2D 1H-1H NOESY 0.6 mM PCdode, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.01 mM 4.4 1 atm 313 Bruker AVANCE III 600 3 2D 1H-13C HSQC 0.6 mM PCdode, 5 % [U-100% 2H] D2O 95% H2O/5% D2O 0.01 mM 4.4 1 atm 313 Bruker AVANCE III 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 200 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CYANA 3.98.13 Guntert, Mumenthaler and Wuthrich 2 chemical shift assignment CARA 1.9.1.7 Keller and Wuthrich 3 structure calculation CYANA 3.98.13 Guntert, Mumenthaler and Wuthrich 4 collection TopSpin 4.0.7 Bruker Biospin 5 peak picking CARA 1.9.1.7 Keller and Wuthrich