7OLC

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history. 


Literature

High-resolution structures of a thermophilic eukaryotic 80S ribosome reveal atomistic details of translocation.

Kisonaite, M., Wild, K., Lapouge, K., Ruppert, T., Sinning, I.

(2022) Nat Commun 13: 476-476

  • DOI: https://doi.org/10.1038/s41467-022-27967-9
  • Primary Citation of Related Structures:  
    7OLC, 7OLD

  • PubMed Abstract: 

    Ribosomes are complex and highly conserved ribonucleoprotein assemblies catalyzing protein biosynthesis in every organism. Here we present high-resolution cryo-EM structures of the 80S ribosome from a thermophilic fungus in two rotational states, which due to increased 80S stability provide a number of mechanistic details of eukaryotic translation. We identify a universally conserved 'nested base-triple knot' in the 26S rRNA at the polypeptide tunnel exit with a bulged-out nucleotide that likely serves as an adaptable element for nascent chain containment and handover. We visualize the structure and dynamics of the ribosome protective factor Stm1 upon ribosomal 40S head swiveling. We describe the structural impact of a unique and essential m 1 acp 3 Ψ 18S rRNA hyper-modification embracing the anticodon wobble-position for eukaryotic tRNA and mRNA translocation. We complete the eEF2-GTPase switch cycle describing the GDP-bound post-hydrolysis state. Taken together, our data and their integration into the structural landscape of 80S ribosomes furthers our understanding of protein biogenesis.

    • Organizational Affiliation: 

    Biochemiezentrum der Universität Heidelberg (BZH), INF328, D-69120, Heidelberg, Germany.


Macromolecules

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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Putative guanine nucleotide-binding proteinE [auth A]316Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
HABP4_PAI-RBP1 domain-containing proteinF [auth B]302Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosome-associated molecular chaperone SSB1G [auth C]614Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 3.6.4.10
UniProt
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L2-like proteinH [auth LA]254Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L3-like proteinI [auth LB]392Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L4-like proteinJ [auth LC]365Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l5-like proteinK [auth LD]304Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L6L [auth LE]200Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l7-like proteinM [auth LF]249Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L8N [auth LG]262Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l9-like proteinO [auth LH]192Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L10-like proteinP [auth LI]219Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
Putative ribosomal proteinQ [auth LJ]173Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L12-like proteinR [auth LK]165Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L13S [auth LL]213Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L14-like proteinT [auth LM]142Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S1R0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L15U [auth LN]203Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L16-like proteinV [auth LO]204Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SH61 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l17-like proteinW [auth LP]187Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L18-like proteinX [auth LQ]213Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L19Y [auth LR]192Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L20Z [auth LS]174Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l21-like proteinAA [auth LT]160Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L22-like proteinBA [auth LU]127Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l23-like proteinCA [auth LV]139Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L24-like proteinDA [auth LW]161Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L25-like proteinEA [auth LX]156Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L26-like proteinFA [auth LY]138Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L27GA [auth LZ]135Thermochaetoides thermophila DSM 1495Mutation(s): 0 
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Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L28-like proteinHA [auth La]149Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L29IA [auth Lb]65Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l30-like proteinJA [auth Lc]108Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
Putative 60S ribosomal proteinKA [auth Ld]120Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L32-like proteinLA [auth Le]131Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein l33-like proteinMA [auth Lf]109Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein l34-like proteinNA [auth Lg]119Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
Dolichyl-diphosphooligosaccharide--protein glycotransferaseOA [auth Lh]126Thermochaetoides thermophila DSM 1495Mutation(s): 0 
EC: 2.4.99.18
UniProt
Find proteins for G0S0D7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L36PA [auth Li]110Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein L37QA [auth Lj]95Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L38-like proteinRA [auth Lk]81Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SG89 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
eL39SA [auth Ll]51Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for Q2H9R2 (Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970))
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Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
UbiquitinTA [auth Lm]128Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41-AUA [auth Ln],
YA [auth Lr]		25Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for P0CX86 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L44-like proteinVA [auth Lo]106Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SBZ6 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 49
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L43-like proteinWA [auth Lp]92Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S6B0 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Putative 60S ribosomal proteinXA [auth Lq]147Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
60S acidic ribosomal protein P0ZA [auth Ls]312Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 52
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S0AB [auth SA]285Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 53
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S1BB [auth SB]255Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 54
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2-like proteinCB [auth SC]263Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SAV4 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 55
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3-like proteinDB [auth SD]254Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 56
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4EB [auth SE]264Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 57
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein s5-like proteinFB [auth SF]212Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 58
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6GB [auth SG]239Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 59
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7HB [auth SH]203Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 60
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8IB [auth SI]202Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 61
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein s9-like proteinJB [auth SJ]190Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 62
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein s10-like proteinKB [auth SK]159Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 63
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11-like proteinLB [auth SL]161Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 64
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12MB [auth SM]144Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 65
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13-like proteinNB [auth SN]151Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 66
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14-like proteinOB [auth SO]150Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SFL1 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 67
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein s15-like proteinPB [auth SP]153Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S084 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 68
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16-like proteinQB [auth SQ]143Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SBR7 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 69
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17-like proteinRB [auth SR]143Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S871 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 70
MoleculeChains Sequence LengthOrganismDetailsImage
Putative ribosomal proteinSB [auth SS]156Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 71
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19-like proteinTB [auth ST]153Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SFK8 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 72
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20-like proteinUB [auth SU]116Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0S379 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 73
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21-like proteinVB [auth SV]98Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for G0SI21 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 74
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S22-like proteinWB [auth SW]130Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 75
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein s23-like proteinXB [auth SX]145Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 76
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24YB [auth SY]136Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for P0CU28 (Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719))
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Entity ID: 77
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25ZB [auth SZ]99Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 78
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26AC [auth Sa]119Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 79
MoleculeChains Sequence LengthOrganismDetailsImage
Ribosomal protein s27-like proteinBC [auth Sb]82Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 80
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28-like proteinCC [auth Sc]68Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 81
MoleculeChains Sequence LengthOrganismDetailsImage
uS14DC [auth Sd]56Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for Q2HB68 (Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970))
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Entity ID: 82
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30EC [auth Se]62Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
Find proteins for Q2H4C5 (Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970))
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Entity ID: 83
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27a-like proteinFC [auth Sf]154Thermochaetoides thermophila DSM 1495Mutation(s): 0 
UniProt
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Entity ID: 1
MoleculeChains LengthOrganismImage
26S rRNAA [auth 1]3,337Thermochaetoides thermophila DSM 1495
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Entity ID: 2
MoleculeChains LengthOrganismImage
18S rRNAB [auth 2]1,796Thermochaetoides thermophila DSM 1495
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Entity ID: 3
MoleculeChains LengthOrganismImage
5S rRNAC [auth 3]120Thermochaetoides thermophila DSM 1495
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Entity ID: 4
MoleculeChains LengthOrganismImage
5.8S rRNAD [auth 4]156Thermochaetoides thermophila DSM 1495
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Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN
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AY [auth Lg]
BY [auth Lj]
CY [auth Lm]
DY [auth Lo]
FY [auth Lp]
AY [auth Lg],
BY [auth Lj],
CY [auth Lm],
DY [auth Lo],
FY [auth Lp],
KY [auth Sa],
LY [auth Sb],
MY [auth Sd]
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
MG
Query on MG
Download Ideal Coordinates CCD File 
AD [auth 1]
AE [auth 1]
AF [auth 1]
AG [auth 1]
AH [auth 1]
AD [auth 1],
AE [auth 1],
AF [auth 1],
AG [auth 1],
AH [auth 1],
AI [auth 1],
AJ [auth 1],
AK [auth 1],
AL [auth 1],
AM [auth 1],
AN [auth 1],
AO [auth 1],
AP [auth 1],
AQ [auth 1],
AR [auth 1],
AS [auth 1],
AT [auth 2],
AU [auth 2],
AV [auth 2],
AW [auth 2],
AX [auth 3],
BD [auth 1],
BE [auth 1],
BF [auth 1],
BG [auth 1],
BH [auth 1],
BI [auth 1],
BJ [auth 1],
BK [auth 1],
BL [auth 1],
BM [auth 1],
BN [auth 1],
BO [auth 1],
BP [auth 1],
BQ [auth 1],
BR [auth 1],
BS [auth 1],
BT [auth 2],
BU [auth 2],
BV [auth 2],
BW [auth 2],
BX [auth 3],
CD [auth 1],
CE [auth 1],
CF [auth 1],
CG [auth 1],
CH [auth 1],
CI [auth 1],
CJ [auth 1],
CK [auth 1],
CL [auth 1],
CM [auth 1],
CN [auth 1],
CO [auth 1],
CP [auth 1],
CQ [auth 1],
CR [auth 1],
CS [auth 1],
CT [auth 2],
CU [auth 2],
CV [auth 2],
CW [auth 2],
CX [auth 3],
DD [auth 1],
DE [auth 1],
DF [auth 1],
DG [auth 1],
DH [auth 1],
DI [auth 1],
DJ [auth 1],
DK [auth 1],
DL [auth 1],
DM [auth 1],
DN [auth 1],
DO [auth 1],
DP [auth 1],
DQ [auth 1],
DR [auth 1],
DS [auth 1],
DT [auth 2],
DU [auth 2],
DV [auth 2],
DW [auth 2],
DX [auth 3],
ED [auth 1],
EE [auth 1],
EF [auth 1],
EG [auth 1],
EH [auth 1],
EI [auth 1],
EJ [auth 1],
EK [auth 1],
EL [auth 1],
EM [auth 1],
EN [auth 1],
EO [auth 1],
EP [auth 1],
EQ [auth 1],
ER [auth 1],
ES [auth 1],
ET [auth 2],
EU [auth 2],
EV [auth 2],
EW [auth 2],
EX [auth 4],
EY [auth Lo],
FD [auth 1],
FE [auth 1],
FF [auth 1],
FG [auth 1],
FH [auth 1],
FI [auth 1],
FJ [auth 1],
FK [auth 1],
FL [auth 1],
FM [auth 1],
FN [auth 1],
FO [auth 1],
FP [auth 1],
FQ [auth 1],
FR [auth 1],
FS [auth 2],
FT [auth 2],
FU [auth 2],
FV [auth 2],
FW [auth 2],
FX [auth 4],
GC [auth 1],
GD [auth 1],
GE [auth 1],
GF [auth 1],
GG [auth 1],
GH [auth 1],
GI [auth 1],
GJ [auth 1],
GK [auth 1],
GL [auth 1],
GM [auth 1],
GN [auth 1],
GO [auth 1],
GP [auth 1],
GQ [auth 1],
GR [auth 1],
GS [auth 2],
GT [auth 2],
GU [auth 2],
GV [auth 2],
GW [auth 2],
GX [auth 4],
GY [auth SN],
HC [auth 1],
HD [auth 1],
HE [auth 1],
HF [auth 1],
HG [auth 1],
HH [auth 1],
HI [auth 1],
HJ [auth 1],
HK [auth 1],
HL [auth 1],
HM [auth 1],
HN [auth 1],
HO [auth 1],
HP [auth 1],
HQ [auth 1],
HR [auth 1],
HS [auth 2],
HT [auth 2],
HU [auth 2],
HV [auth 2],
HW [auth 2],
HX [auth 4],
HY [auth SO],
IC [auth 1],
ID [auth 1],
IE [auth 1],
IF [auth 1],
IG [auth 1],
IH [auth 1],
II [auth 1],
IJ [auth 1],
IK [auth 1],
IL [auth 1],
IM [auth 1],
IN [auth 1],
IO [auth 1],
IP [auth 1],
IQ [auth 1],
IR [auth 1],
IS [auth 2],
IT [auth 2],
IU [auth 2],
IV [auth 2],
IW [auth 2],
IX [auth 4],
IY [auth SQ],
JC [auth 1],
JD [auth 1],
JE [auth 1],
JF [auth 1],
JG [auth 1],
JH [auth 1],
JI [auth 1],
JJ [auth 1],
JK [auth 1],
JL [auth 1],
JM [auth 1],
JN [auth 1],
JO [auth 1],
JP [auth 1],
JQ [auth 1],
JR [auth 1],
JS [auth 2],
JT [auth 2],
JU [auth 2],
JV [auth 2],
JW [auth 2],
JX [auth 4],
JY [auth SX],
KC [auth 1],
KD [auth 1],
KE [auth 1],
KF [auth 1],
KG [auth 1],
KH [auth 1],
KI [auth 1],
KJ [auth 1],
KK [auth 1],
KL [auth 1],
KM [auth 1],
KN [auth 1],
KO [auth 1],
KP [auth 1],
KQ [auth 1],
KR [auth 1],
KS [auth 2],
KT [auth 2],
KU [auth 2],
KV [auth 2],
KW [auth 2],
KX [auth 4],
LC [auth 1],
LD [auth 1],
LE [auth 1],
LF [auth 1],
LG [auth 1],
LH [auth 1],
LI [auth 1],
LJ [auth 1],
LK [auth 1],
LL [auth 1],
LM [auth 1],
LN [auth 1],
LO [auth 1],
LP [auth 1],
LQ [auth 1],
LR [auth 1],
LS [auth 2],
LT [auth 2],
LU [auth 2],
LV [auth 2],
LW [auth 2],
LX [auth 4],
MC [auth 1],
MD [auth 1],
ME [auth 1],
MF [auth 1],
MG [auth 1],
MH [auth 1],
MI [auth 1],
MJ [auth 1],
MK [auth 1],
ML [auth 1],
MM [auth 1],
MN [auth 1],
MO [auth 1],
MP [auth 1],
MQ [auth 1],
MR [auth 1],
MS [auth 2],
MT [auth 2],
MU [auth 2],
MV [auth 2],
MW [auth 2],
MX [auth 4],
NC [auth 1],
ND [auth 1],
NE [auth 1],
NF [auth 1],
NG [auth 1],
NH [auth 1],
NI [auth 1],
NJ [auth 1],
NK [auth 1],
NL [auth 1],
NM [auth 1],
NN [auth 1],
NO [auth 1],
NP [auth 1],
NQ [auth 1],
NR [auth 1],
NS [auth 2],
NT [auth 2],
NU [auth 2],
NV [auth 2],
NW [auth 2],
NX [auth 4],
OC [auth 1],
OD [auth 1],
OE [auth 1],
OF [auth 1],
OG [auth 1],
OH [auth 1],
OI [auth 1],
OJ [auth 1],
OK [auth 1],
OL [auth 1],
OM [auth 1],
ON [auth 1],
OO [auth 1],
OP [auth 1],
OQ [auth 1],
OR [auth 1],
OS [auth 2],
OT [auth 2],
OU [auth 2],
OV [auth 2],
OW [auth 2],
OX [auth 4],
PC [auth 1],
PD [auth 1],
PE [auth 1],
PF [auth 1],
PG [auth 1],
PH [auth 1],
PI [auth 1],
PJ [auth 1],
PK [auth 1],
PL [auth 1],
PM [auth 1],
PN [auth 1],
PO [auth 1],
PP [auth 1],
PQ [auth 1],
PR [auth 1],
PS [auth 2],
PT [auth 2],
PU [auth 2],
PV [auth 2],
PW [auth 2],
PX [auth LA],
QC [auth 1],
QD [auth 1],
QE [auth 1],
QF [auth 1],
QG [auth 1],
QH [auth 1],
QI [auth 1],
QJ [auth 1],
QK [auth 1],
QL [auth 1],
QM [auth 1],
QN [auth 1],
QO [auth 1],
QP [auth 1],
QQ [auth 1],
QR [auth 1],
QS [auth 2],
QT [auth 2],
QU [auth 2],
QV [auth 2],
QW [auth 2],
QX [auth LB],
RC [auth 1],
RD [auth 1],
RE [auth 1],
RF [auth 1],
RG [auth 1],
RH [auth 1],
RI [auth 1],
RJ [auth 1],
RK [auth 1],
RL [auth 1],
RM [auth 1],
RN [auth 1],
RO [auth 1],
RP [auth 1],
RQ [auth 1],
RR [auth 1],
RS [auth 2],
RT [auth 2],
RU [auth 2],
RV [auth 2],
RW [auth 2],
RX [auth LI],
SC [auth 1],
SD [auth 1],
SE [auth 1],
SF [auth 1],
SG [auth 1],
SH [auth 1],
SI [auth 1],
SJ [auth 1],
SK [auth 1],
SL [auth 1],
SM [auth 1],
SN [auth 1],
SO [auth 1],
SP [auth 1],
SQ [auth 1],
SR [auth 1],
SS [auth 2],
ST [auth 2],
SU [auth 2],
SV [auth 2],
SW [auth 2],
SX [auth LN],
TC [auth 1],
TD [auth 1],
TE [auth 1],
TF [auth 1],
TG [auth 1],
TH [auth 1],
TI [auth 1],
TJ [auth 1],
TK [auth 1],
TL [auth 1],
TM [auth 1],
TN [auth 1],
TO [auth 1],
TP [auth 1],
TQ [auth 1],
TR [auth 1],
TS [auth 2],
TT [auth 2],
TU [auth 2],
TV [auth 2],
TW [auth 2],
TX [auth LN],
UC [auth 1],
UD [auth 1],
UE [auth 1],
UF [auth 1],
UG [auth 1],
UH [auth 1],
UI [auth 1],
UJ [auth 1],
UK [auth 1],
UL [auth 1],
UM [auth 1],
UN [auth 1],
UO [auth 1],
UP [auth 1],
UQ [auth 1],
UR [auth 1],
US [auth 2],
UT [auth 2],
UU [auth 2],
UV [auth 2],
UW [auth 2],
UX [auth LN],
VC [auth 1],
VD [auth 1],
VE [auth 1],
VF [auth 1],
VG [auth 1],
VH [auth 1],
VI [auth 1],
VJ [auth 1],
VK [auth 1],
VL [auth 1],
VM [auth 1],
VN [auth 1],
VO [auth 1],
VP [auth 1],
VQ [auth 1],
VR [auth 1],
VS [auth 2],
VT [auth 2],
VU [auth 2],
VV [auth 2],
VW [auth 2],
VX [auth LP],
WC [auth 1],
WD [auth 1],
WE [auth 1],
WF [auth 1],
WG [auth 1],
WH [auth 1],
WI [auth 1],
WJ [auth 1],
WK [auth 1],
WL [auth 1],
WM [auth 1],
WN [auth 1],
WO [auth 1],
WP [auth 1],
WQ [auth 1],
WR [auth 1],
WS [auth 2],
WT [auth 2],
WU [auth 2],
WV [auth 2],
WW [auth 3],
WX [auth LT],
XC [auth 1],
XD [auth 1],
XE [auth 1],
XF [auth 1],
XG [auth 1],
XH [auth 1],
XI [auth 1],
XJ [auth 1],
XK [auth 1],
XL [auth 1],
XM [auth 1],
XN [auth 1],
XO [auth 1],
XP [auth 1],
XQ [auth 1],
XR [auth 1],
XS [auth 2],
XT [auth 2],
XU [auth 2],
XV [auth 2],
XW [auth 3],
XX [auth LT],
YC [auth 1],
YD [auth 1],
YE [auth 1],
YF [auth 1],
YG [auth 1],
YH [auth 1],
YI [auth 1],
YJ [auth 1],
YK [auth 1],
YL [auth 1],
YM [auth 1],
YN [auth 1],
YO [auth 1],
YP [auth 1],
YQ [auth 1],
YR [auth 1],
YS [auth 2],
YT [auth 2],
YU [auth 2],
YV [auth 2],
YW [auth 3],
YX [auth LV],
ZC [auth 1],
ZD [auth 1],
ZE [auth 1],
ZF [auth 1],
ZG [auth 1],
ZH [auth 1],
ZI [auth 1],
ZJ [auth 1],
ZK [auth 1],
ZL [auth 1],
ZM [auth 1],
ZN [auth 1],
ZO [auth 1],
ZP [auth 1],
ZQ [auth 1],
ZR [auth 1],
ZS [auth 2],
ZT [auth 2],
ZU [auth 2],
ZV [auth 2],
ZW [auth 3],
ZX [auth Lb]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
SAC
Query on SAC		V [auth LO]L-PEPTIDE LINKINGC5 H9 N O4SER
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX

Structure Validation

View Full Validation Report



View more in-depth experimental data
Entry History & Funding Information

Deposition Data

Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2022-01-26
    Type: Initial release
  • Version 1.1: 2022-02-09
    Changes: Database references
  • Version 1.2: 2022-04-06
    Changes: Source and taxonomy, Structure summary